Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0783
         (658 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57049| Best HMM Match : No HMM Matches (HMM E-Value=.)              42   3e-04
SB_13868| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.005
SB_45893| Best HMM Match : Arc (HMM E-Value=3.3)                       33   0.20 
SB_39542| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.62 
SB_7447| Best HMM Match : CHGN (HMM E-Value=0)                         31   1.1  
SB_11394| Best HMM Match : GntR (HMM E-Value=7.9)                      28   5.8  

>SB_57049| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 50

 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 19/24 (79%), Positives = 20/24 (83%)
 Frame = -1

Query: 97 VPLRKPCYDFYFL*MIKFGQLPNN 26
          V LRKPCYDFYFL MIKF QL +N
Sbjct: 1  VHLRKPCYDFYFLYMIKFDQLFDN 24


>SB_13868| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 56

 Score = 38.3 bits (85), Expect = 0.005
 Identities = 16/23 (69%), Positives = 17/23 (73%)
 Frame = -1

Query: 94 PLRKPCYDFYFL*MIKFGQLPNN 26
          P   PCYDFYFL MIKF QL +N
Sbjct: 8  PYENPCYDFYFLKMIKFDQLFDN 30


>SB_45893| Best HMM Match : Arc (HMM E-Value=3.3)
          Length = 186

 Score = 33.1 bits (72), Expect = 0.20
 Identities = 14/18 (77%), Positives = 16/18 (88%)
 Frame = +2

Query: 35  KLTKLDHLEEVKVVTRFP 88
           K+ + DHLEEVKVVTRFP
Sbjct: 73  KVGQTDHLEEVKVVTRFP 90


>SB_39542| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 106

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 12/15 (80%), Positives = 13/15 (86%)
 Frame = -1

Query: 112 MILPQVPLRKPCYDF 68
           +I PQVPLR PCYDF
Sbjct: 17  VIQPQVPLRLPCYDF 31


>SB_7447| Best HMM Match : CHGN (HMM E-Value=0)
          Length = 918

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = +3

Query: 201 FLSFIRFLTLSRAFVATILNLTADIIYLILLRTARARQHTHKT-IRALQNTITDTEI 368
           + +F+RF+   + F +  LNL AD+  LI+     A  H HK+ I+  Q    + E+
Sbjct: 485 YSTFVRFM---KTFESVCLNLRADVKLLIVYFPEVAESHQHKSLIKKYQTRYPEAEL 538


>SB_11394| Best HMM Match : GntR (HMM E-Value=7.9)
          Length = 451

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
 Frame = -1

Query: 367 ISVSVMVFCSARIVLC----VCCRARAVRSSIRYIMSAVR 260
           ++ +V+V CS R+  C    VCC  R V  S R   + +R
Sbjct: 365 VAYAVVVCCSCRVACCSCRVVCCSCRVVCCSCRVAHAVLR 404


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,693,612
Number of Sequences: 59808
Number of extensions: 301328
Number of successful extensions: 760
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 628
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 725
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)