Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0779
         (335 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22788| Best HMM Match : No HMM Matches (HMM E-Value=.)              76   6e-15
SB_20450| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.2  
SB_30805| Best HMM Match : Neur_chan_LBD (HMM E-Value=2.9e-06)         28   2.2  
SB_19614| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.2  
SB_50551| Best HMM Match : Extensin_2 (HMM E-Value=0.41)               27   3.8  
SB_25300| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.0  
SB_33931| Best HMM Match : NADH5_C (HMM E-Value=0.67)                  26   6.6  
SB_29818| Best HMM Match : zf-AD (HMM E-Value=1.3)                     26   6.6  
SB_42227| Best HMM Match : SDA1 (HMM E-Value=0.66)                     26   8.7  

>SB_22788| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 411

 Score = 76.2 bits (179), Expect = 6e-15
 Identities = 33/61 (54%), Positives = 40/61 (65%)
 Frame = +2

Query: 152 VNVVEALQEFWQVKXXXXXXXXXXXLVIYQSVPAAHPSYVCYVTLPGGACFGSFQNCPTK 331
           VNV++AL+EFW +K            V Y+   A  P YVC+VTLPGG+CFGSFQ CPTK
Sbjct: 167 VNVIDALEEFWNMKKAKGAKFKTGDCVSYEPGSAEKPPYVCFVTLPGGSCFGSFQPCPTK 226

Query: 332 A 334
           A
Sbjct: 227 A 227


>SB_20450| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 556

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -2

Query: 238 VNDEGAAHRAPASCRLHLPKLLEGF 164
           VN+E A  +AP   R HLP LL  F
Sbjct: 32  VNNELACFKAPCKLRQHLPALLANF 56


>SB_30805| Best HMM Match : Neur_chan_LBD (HMM E-Value=2.9e-06)
          Length = 147

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +3

Query: 216 WAAPSSFTSLCRLPIR 263
           W AP+SFTS C+L +R
Sbjct: 65  WVAPASFTSDCKLRVR 80


>SB_19614| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 603

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = -1

Query: 80  SGTAPGTPW-PRRYLIAARGACGPR 9
           SG    T W   RYL+++ G CGP+
Sbjct: 371 SGDGANTGWFSARYLVSSEGPCGPK 395


>SB_50551| Best HMM Match : Extensin_2 (HMM E-Value=0.41)
          Length = 376

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 263 SYVCYVTLPGGACFGSFQN 319
           SY+  + +PGGACF S  N
Sbjct: 43  SYLVSIPVPGGACFASQDN 61


>SB_25300| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 117

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -2

Query: 322 AVLKTAKARSTGERDVADVGRMGSRHRLVNDE 227
           A+ K  K R TGER   +VG +   +R+V++E
Sbjct: 60  ALEKIRKFRETGERTKFEVGSVKDVYRVVDEE 91


>SB_33931| Best HMM Match : NADH5_C (HMM E-Value=0.67)
          Length = 407

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -2

Query: 208 PASCRLHLPKLLEGFH 161
           PA CR H  K LEGF+
Sbjct: 363 PAGCRSHSKKCLEGFY 378


>SB_29818| Best HMM Match : zf-AD (HMM E-Value=1.3)
          Length = 275

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +2

Query: 227 LVIYQSVPAAHPSYVCY 277
           +V+ + +P  HP Y+CY
Sbjct: 95  IVVQEDLPTIHPPYLCY 111


>SB_42227| Best HMM Match : SDA1 (HMM E-Value=0.66)
          Length = 806

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -2

Query: 214 RAPASCRLHLPKLLEGFH 161
           +AP   R HLP LL  FH
Sbjct: 14  KAPCKLRQHLPALLANFH 31


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,563,146
Number of Sequences: 59808
Number of extensions: 116356
Number of successful extensions: 329
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 295
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 329
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 473307974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)