Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1201
         (316 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    22   1.3  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    21   3.1  
AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxida...    21   4.0  
AY052625-1|AAL15473.1|  135|Tribolium castaneum tryptophan oxyge...    19   9.4  
AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan oxyge...    19   9.4  
AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan oxyge...    19   9.4  

>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 1.3
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +1

Query: 97  IFVKKKNGNNNISFVLPNMHITI 165
           I   +  GNNNI  V+P + I I
Sbjct: 72  IIKSRAAGNNNIQRVVPEIKIQI 94


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 21.0 bits (42), Expect = 3.1
 Identities = 6/20 (30%), Positives = 13/20 (65%)
 Frame = +2

Query: 140 FYLICILQYLTTYIKYCIYL 199
           F+L+CI  +   +I + ++L
Sbjct: 141 FFLLCIYYFYCAFIIFTVHL 160


>AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxidase
           subunit 2 protein.
          Length = 683

 Score = 20.6 bits (41), Expect = 4.0
 Identities = 9/26 (34%), Positives = 12/26 (46%)
 Frame = +1

Query: 94  KIFVKKKNGNNNISFVLPNMHITIPY 171
           K  V  K G N I+       +TIP+
Sbjct: 529 KFTVNLKQGQNTITRASSQSSVTIPF 554


>AY052625-1|AAL15473.1|  135|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 135

 Score = 19.4 bits (38), Expect = 9.4
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -3

Query: 260 KLNAPQQNLKRVAQNYACVLVN 195
           KL   Q+N  +  QNY+ V  N
Sbjct: 84  KLGVRQENRVKYNQNYSKVFGN 105


>AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 19.4 bits (38), Expect = 9.4
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -3

Query: 260 KLNAPQQNLKRVAQNYACVLVN 195
           KL   Q+N  +  QNY+ V  N
Sbjct: 144 KLGVRQENRVKYNQNYSKVFGN 165


>AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 19.4 bits (38), Expect = 9.4
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -3

Query: 260 KLNAPQQNLKRVAQNYACVLVN 195
           KL   Q+N  +  QNY+ V  N
Sbjct: 144 KLGVRQENRVKYNQNYSKVFGN 165


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 70,950
Number of Sequences: 336
Number of extensions: 1316
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 49
effective length of database: 106,121
effective search space used:  5836655
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)