Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1201
         (316 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54947| Best HMM Match : rve (HMM E-Value=2.3e-31)                   27   2.4  
SB_49522| Best HMM Match : WXG100 (HMM E-Value=9.4)                    26   5.6  
SB_24110| Best HMM Match : Metallothionein (HMM E-Value=1.9)           26   5.6  
SB_32341| Best HMM Match : Lectin_C (HMM E-Value=0.086)                26   7.4  
SB_6151| Best HMM Match : Extensin_2 (HMM E-Value=2.6)                 25   9.8  

>SB_54947| Best HMM Match : rve (HMM E-Value=2.3e-31)
          Length = 1283

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = +2

Query: 134 RSFYLICILQYLTTYIKY-CIYLQEHKRNFEPP 229
           ++ +LI  LQ LT +I+Y CI L++ +R   PP
Sbjct: 239 QTLFLILSLQ-LTQFIQYTCIMLRDQERELPPP 270


>SB_49522| Best HMM Match : WXG100 (HMM E-Value=9.4)
          Length = 161

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +3

Query: 96  NLCQKKKREQQHFVRFT*YAYYNTLQPTLNTVFIYKNTSVILSH 227
           N  ++  +  + FV  T   ++NTLQ  +NT   + NTSV  +H
Sbjct: 116 NTSEEFVKTSEQFVNTT-EQFFNTLQQFINTREQFVNTSVRQNH 158


>SB_24110| Best HMM Match : Metallothionein (HMM E-Value=1.9)
          Length = 237

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = +2

Query: 143 YLICILQYLTTYIKYCIYLQEH 208
           Y +C ++Y    ++YC+YL E+
Sbjct: 76  YCMCQVKYCMCQVEYCMYLVEY 97


>SB_32341| Best HMM Match : Lectin_C (HMM E-Value=0.086)
          Length = 407

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
 Frame = +3

Query: 69  LGLVTLINKNLCQ-----KKKREQQHFVRFT*YAYYNTLQPTLNTVFIYKNTSVILSH 227
           L  V L+N  +C        +R++ HF  F   A+Y  +Q        ++++SVI SH
Sbjct: 262 LSSVELVNGGVCHCWVSPSFERDRPHFALFQTPAHYRVIQYISYYQSYHRSSSVINSH 319


>SB_6151| Best HMM Match : Extensin_2 (HMM E-Value=2.6)
          Length = 287

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 91  IKIFVKKKNGNNNISFVLPNMHITI 165
           I +F K+K  NN  +F LP  H +I
Sbjct: 25  IIVFTKRKFANNYTAFSLPESHQSI 49


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,475,181
Number of Sequences: 59808
Number of extensions: 135980
Number of successful extensions: 203
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 400488992
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)