Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1200
(598 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_25829| Best HMM Match : No HMM Matches (HMM E-Value=.) 78 5e-15
SB_10421| Best HMM Match : Guanylate_cyc (HMM E-Value=0) 63 1e-10
SB_5072| Best HMM Match : Aldedh (HMM E-Value=2.4e-14) 46 3e-05
SB_12802| Best HMM Match : Aldedh (HMM E-Value=0) 39 0.003
SB_19772| Best HMM Match : Aldedh (HMM E-Value=5.9e-12) 36 0.025
SB_59357| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.13
SB_904| Best HMM Match : zf-C3HC4 (HMM E-Value=7.4e-08) 31 0.53
SB_58786| Best HMM Match : Aldedh (HMM E-Value=0) 29 2.2
SB_52170| Best HMM Match : zf-C3HC4 (HMM E-Value=7.4e-08) 29 2.9
SB_37963| Best HMM Match : Aldedh (HMM E-Value=1.8e-16) 28 5.0
SB_30441| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_11426| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_52935| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
SB_18678| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
SB_10656| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
>SB_25829| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 826
Score = 78.2 bits (184), Expect = 5e-15
Identities = 40/82 (48%), Positives = 49/82 (59%)
Frame = +1
Query: 256 NPANGQVIAEVQHXXXXXXXXXXXXXXXXFKLGSPWRTMDASERGALINKLADLIERDRT 435
NP G+ I ++ FKLGS WRTMDAS RG L+ KLA LI+RD
Sbjct: 351 NPTTGEKICDISEGDKEDVDKAVKAAKEAFKLGSAWRTMDASMRGKLLYKLAQLIDRDIA 410
Query: 436 YLASLETLDNGKPYKDSYFGDL 501
YLASLET+D+GK + DS GD+
Sbjct: 411 YLASLETIDSGKLFSDS-VGDM 431
>SB_10421| Best HMM Match : Guanylate_cyc (HMM E-Value=0)
Length = 1485
Score = 63.3 bits (147), Expect = 1e-10
Identities = 30/43 (69%), Positives = 32/43 (74%)
Frame = +1
Query: 343 FKLGSPWRTMDASERGALINKLADLIERDRTYLASLETLDNGK 471
FKLGS WRTMDAS RG + KLADL ERD YLA LE+ D GK
Sbjct: 1250 FKLGSVWRTMDASARGHFLYKLADLCERDADYLARLESYDGGK 1292
>SB_5072| Best HMM Match : Aldedh (HMM E-Value=2.4e-14)
Length = 266
Score = 45.6 bits (103), Expect = 3e-05
Identities = 27/78 (34%), Positives = 37/78 (47%)
Frame = +1
Query: 238 EDLQN*NPANGQVIAEVQHXXXXXXXXXXXXXXXXFKLGSPWRTMDASERGALINKLADL 417
+ +Q NPA +VIA V F SPW + ER L+ ADL
Sbjct: 59 QTIQVLNPATAEVIARVPRAGQREIDRAVMAARQAFD-DSPWSRIKPVERQKLLWNFADL 117
Query: 418 IERDRTYLASLETLDNGK 471
IE++ LA +E++DNGK
Sbjct: 118 IEKNAALLAEIESIDNGK 135
>SB_12802| Best HMM Match : Aldedh (HMM E-Value=0)
Length = 880
Score = 39.1 bits (87), Expect = 0.003
Identities = 20/77 (25%), Positives = 35/77 (45%)
Frame = +1
Query: 256 NPANGQVIAEVQHXXXXXXXXXXXXXXXXFKLGSPWRTMDASERGALINKLADLIERDRT 435
+P+ G + EV+ FK W + SERG ++ + L+ + R
Sbjct: 297 DPSTGHISCEVKGSGKTEVKRAVLSARKAFKT---WSVLSGSERGRILGDASRLVRKRRE 353
Query: 436 YLASLETLDNGKPYKDS 486
+A +E DNGKP+ ++
Sbjct: 354 DIAKVEVHDNGKPFHEA 370
>SB_19772| Best HMM Match : Aldedh (HMM E-Value=5.9e-12)
Length = 211
Score = 35.9 bits (79), Expect = 0.025
Identities = 18/29 (62%), Positives = 19/29 (65%)
Frame = +1
Query: 445 SLETLDNGKPYKDSYFGDLYA**KTYGIY 531
SLETLDNGKPY DS+ DL K Y Y
Sbjct: 32 SLETLDNGKPYNDSFNVDLEFTIKCYRYY 60
>SB_59357| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1716
Score = 33.5 bits (73), Expect = 0.13
Identities = 21/72 (29%), Positives = 29/72 (40%)
Frame = -2
Query: 399 DKGPPLGGVHCSPW*SKFERISSCLHSFVHICFVGMLDLSYNLAIGRVSVLKVFPSEDFT 220
D P + V C + I CLHSF C V L SY+ + V K P +
Sbjct: 1359 DLNPHIICVLCGGYLVDATTIVECLHSFCRSCIVSWLQASYHCPVCDTEVHKTRPFLNIR 1418
Query: 219 HSLFMKRPVYKI 184
++ VYK+
Sbjct: 1419 PDCVLQDIVYKL 1430
>SB_904| Best HMM Match : zf-C3HC4 (HMM E-Value=7.4e-08)
Length = 510
Score = 31.5 bits (68), Expect = 0.53
Identities = 16/52 (30%), Positives = 23/52 (44%)
Frame = -2
Query: 339 ISSCLHSFVHICFVGMLDLSYNLAIGRVSVLKVFPSEDFTHSLFMKRPVYKI 184
I CLHSF C V L+ SY + + K P + ++ VYK+
Sbjct: 29 IIECLHSFCRCCIVRYLETSYRCPVCDAEIHKTRPLLNIRADNVLQDIVYKV 80
>SB_58786| Best HMM Match : Aldedh (HMM E-Value=0)
Length = 421
Score = 29.5 bits (63), Expect = 2.2
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = +1
Query: 376 ASERGALINKLADLIERDRTYLASLETLDNGKPYKDSYFGDLYA 507
A ER ++ K DLI + +A + TL++GKP ++ LYA
Sbjct: 4 AKERSIILRKWYDLILENIDDIAKIITLESGKPLLEARGEVLYA 47
>SB_52170| Best HMM Match : zf-C3HC4 (HMM E-Value=7.4e-08)
Length = 291
Score = 29.1 bits (62), Expect = 2.9
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = -2
Query: 339 ISSCLHSFVHICFVGMLDLSYNLAIGRVSVLKVFP 235
I CLHSF C V L+ SY + + K P
Sbjct: 61 IIECLHSFCRCCIVRYLETSYRCPVCDAEIHKTRP 95
>SB_37963| Best HMM Match : Aldedh (HMM E-Value=1.8e-16)
Length = 266
Score = 28.3 bits (60), Expect = 5.0
Identities = 20/72 (27%), Positives = 27/72 (37%)
Frame = +1
Query: 256 NPANGQVIAEVQHXXXXXXXXXXXXXXXXFKLGSPWRTMDASERGALINKLADLIERDRT 435
+P+ G+V +V FK W + R + KLADLIE
Sbjct: 30 DPSRGEVYCKVPDSGKEHVDLAVAAANAAFK---SWSVSSPAYRAERLRKLADLIEDRLE 86
Query: 436 YLASLETLDNGK 471
A E+ D GK
Sbjct: 87 EFAQAESRDQGK 98
>SB_30441| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 352
Score = 27.9 bits (59), Expect = 6.6
Identities = 13/37 (35%), Positives = 16/37 (43%)
Frame = -1
Query: 556 WILSGPPGGRYRRFFIKHTDHRNTSPCMVCRCPASPG 446
W SGPPG R R F+ + + R SPG
Sbjct: 10 WSSSGPPGRRNTRKFVDYAEKAKLRASAQARNSRSPG 46
>SB_11426| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 522
Score = 27.9 bits (59), Expect = 6.6
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Frame = +1
Query: 76 YKYIKNVAERLQIGSGAKSEFCNSCFSGTGSPNKTGNFI---HRSLHK 210
+KY K++ + +++ K CN C S +K N + HR HK
Sbjct: 166 FKYAKSLKQHIEVHCDPKRVKCNYCCIDLPSTSKLANRVVKRHRGEHK 213
>SB_52935| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1333
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/18 (66%), Positives = 13/18 (72%)
Frame = +2
Query: 200 LFINNEWVKSSDGKTFKT 253
LFIN E+V S GKTF T
Sbjct: 711 LFINGEFVDSHHGKTFNT 728
>SB_18678| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 727
Score = 27.5 bits (58), Expect = 8.7
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = +1
Query: 397 INKLADLIERDRTYLASLETLDNGKP 474
+NKL D E+ + ++E +D+G+P
Sbjct: 608 LNKLLDFEEKPTVFTVAIEVIDHGRP 633
>SB_10656| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1931
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/39 (35%), Positives = 17/39 (43%)
Frame = -1
Query: 544 GPPGGRYRRFFIKHTDHRNTSPCMVCRCPASPG*LNRFC 428
G G R R +++NT C C CP P L FC
Sbjct: 1300 GATGRRCERCKAGFWNYKNTG-CQACNCPGGPENLWGFC 1337
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,010,457
Number of Sequences: 59808
Number of extensions: 402876
Number of successful extensions: 876
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 813
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 876
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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