Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1200
         (598 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g23800.1 68414.m03002 aldehyde dehydrogenase, mitochondrial (...    58   3e-09
At3g48000.1 68416.m05233 aldehyde dehydrogenase (ALDH2) identica...    56   1e-08
At3g24503.1 68416.m03074 aldehyde dehydrogenase (ALDH1a) identic...    51   5e-07
At1g79440.1 68414.m09258 succinate-semialdehyde dehydrogenase (S...    38   0.005
At3g12130.1 68416.m01509 KH domain-containing protein / zinc fin...    30   1.0  
At4g24170.1 68417.m03468 kinesin motor family protein contains P...    30   1.3  
At5g06770.1 68418.m00765 KH domain-containing protein / zinc fin...    29   2.4  
At5g42490.1 68418.m05172 kinesin motor family protein contains P...    29   3.1  
At5g55110.1 68418.m06870 stigma-specific Stig1 family protein si...    27   9.5  

>At1g23800.1 68414.m03002 aldehyde dehydrogenase, mitochondrial
           (ALDH3) nearly identical to mitochondrial aldehyde
           dehydrogenase ALDH3 [Arabidopsis thaliana]
           gi|19850249|gb|AAL99612; contains Pfam profile PF00171:
           aldehyde dehydrogenase (NAD) family protein
          Length = 534

 Score = 58.4 bits (135), Expect = 3e-09
 Identities = 31/77 (40%), Positives = 41/77 (53%)
 Frame = +1

Query: 256 NPANGQVIAEVQHXXXXXXXXXXXXXXXXFKLGSPWRTMDASERGALINKLADLIERDRT 435
           +P NG+VIA+V                  F  G PW  M A ER  ++ + ADLIE+   
Sbjct: 75  DPRNGEVIAQVSEGDAEDVNRAVAAARKAFDEG-PWPKMTAYERSKILFRFADLIEKHND 133

Query: 436 YLASLETLDNGKPYKDS 486
            +A+LET DNGKPY+ S
Sbjct: 134 EIAALETWDNGKPYEQS 150


>At3g48000.1 68416.m05233 aldehyde dehydrogenase (ALDH2) identical
           to aldehyde dehydrogenase [Arabidopsis thaliana]
           GI:8574427; similar to mitochondrial aldehyde
           dehydrogenase [Arabidopsis thaliana]
           gi|19850249|gb|AAL99612; identical to cDNA aldehyde
           dehydrogenase AtALDH2a GI:20530140
          Length = 538

 Score = 56.4 bits (130), Expect = 1e-08
 Identities = 31/82 (37%), Positives = 41/82 (50%)
 Frame = +1

Query: 256 NPANGQVIAEVQHXXXXXXXXXXXXXXXXFKLGSPWRTMDASERGALINKLADLIERDRT 435
           +P  G+VIA V                  F  G PW  M A ER  ++ + ADL+E+   
Sbjct: 79  DPRTGEVIAHVAEGDAEDINRAVKAARTAFDEG-PWPKMSAYERSRVLLRFADLVEKHSE 137

Query: 436 YLASLETLDNGKPYKDSYFGDL 501
            LASLET DNGKPY+ S   ++
Sbjct: 138 ELASLETWDNGKPYQQSLTAEI 159


>At3g24503.1 68416.m03074 aldehyde dehydrogenase (ALDH1a) identical
           to aldehyde dehydrogenase ALDH1a [Arabidopsis thaliana]
           gi|20530143|gb|AAM27004
          Length = 501

 Score = 51.2 bits (117), Expect = 5e-07
 Identities = 30/84 (35%), Positives = 40/84 (47%)
 Frame = +1

Query: 256 NPANGQVIAEVQHXXXXXXXXXXXXXXXXFKLGSPWRTMDASERGALINKLADLIERDRT 435
           +P NG+VIA +                  F  G PW  M   ER  LINK ADLIE +  
Sbjct: 41  DPRNGEVIATIAEGDKEDVDLAVNAARYAFDHG-PWPRMTGFERAKLINKFADLIEENIE 99

Query: 436 YLASLETLDNGKPYKDSYFGDLYA 507
            LA L+ +D GK ++   + D+ A
Sbjct: 100 ELAKLDAVDGGKLFQLGKYADIPA 123



 Score = 31.5 bits (68), Expect = 0.44
 Identities = 12/24 (50%), Positives = 19/24 (79%)
 Frame = +2

Query: 182 EILYTGLFINNEWVKSSDGKTFKT 253
           EI +T LFIN +++ ++ GKTF+T
Sbjct: 16  EIKFTKLFINGQFIDAASGKTFET 39


>At1g79440.1 68414.m09258 succinate-semialdehyde dehydrogenase
           (SSADH1) similar to succinate-semialdehyde dehydrogenase
           [NADP+] (SSDH) [Escherichia coli] SWISS-PROT:P25526;
           identical to succinic semialdehyde dehydrogenase mRNA,
           nuclear gene encoding mitochondrial protein GI:6684441;
           contains TIGRfam profile TIGR01780:succinic semialdehyde
           dehydrogenase; contains Pfam profile PF00171: aldehyde
           dehydrogenase (NAD) family protein
          Length = 528

 Score = 37.9 bits (84), Expect = 0.005
 Identities = 22/77 (28%), Positives = 35/77 (45%)
 Frame = +1

Query: 256 NPANGQVIAEVQHXXXXXXXXXXXXXXXXFKLGSPWRTMDASERGALINKLADLIERDRT 435
           NPA G++IA+V                  F   + W  + A ER  ++ +  DL+   + 
Sbjct: 74  NPATGEIIADVACMGTKETNDAIASSYEAF---TSWSRLTAGERSKVLRRWYDLLIAHKE 130

Query: 436 YLASLETLDNGKPYKDS 486
            L  L TL+ GKP K++
Sbjct: 131 ELGQLITLEQGKPLKEA 147


>At3g12130.1 68416.m01509 KH domain-containing protein / zinc finger
           (CCCH type) family protein
          Length = 248

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +1

Query: 70  GTYKYIKNVAERLQIGSGAKSEFCNSCFSGTGSP-NKTGNFIH 195
           G YK  K   E    G G+KS+ C   FS +G P  +  +F+H
Sbjct: 19  GGYKKSKQEMESYSTGLGSKSKPCTKFFSTSGCPFGENCHFLH 61


>At4g24170.1 68417.m03468 kinesin motor family protein contains Pfam
           domain, PF00225: Kinesin motor domain
          Length = 1004

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +1

Query: 355 SPWRTMDASERGALINKLADLIERDRTYLASL 450
           +P R +D  ERG ++ KL +   RDR++L  L
Sbjct: 147 TPLRLLDDPERGTVVEKLREETLRDRSHLEEL 178


>At5g06770.1 68418.m00765 KH domain-containing protein / zinc finger
           (CCCH type) family protein contains Pfam domains
           PF00013: KH domain and PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 240

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +1

Query: 70  GTYKYIKNVAERLQIGSGAKSEFCNSCFSGTGSP-NKTGNFIH 195
           G +K  K   E +  G G+KS+ C   FS +G P     +F+H
Sbjct: 19  GGFKRSKQEMESISTGLGSKSKPCTKFFSTSGCPFGDNCHFLH 61


>At5g42490.1 68418.m05172 kinesin motor family protein contains Pfam
           domain, PF00225: Kinesin motor domain
          Length = 1087

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +1

Query: 364 RTMDASERGALINKLADLIERDRTYLASLETL 459
           R +D  ERG ++ KL +   +DRT+L  L T+
Sbjct: 154 RLLDDPERGTVVEKLIEETIQDRTHLEELLTV 185


>At5g55110.1 68418.m06870 stigma-specific Stig1 family protein
           similar to stigma-specific protein STIG1 [Nicotiana
           tabacum] GI:496647; contains Pfam profile PF04885:
           Stigma-specific protein, Stig1
          Length = 163

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +2

Query: 482 TRISVICMLNKKPTVSTAGWARQDPRECFWPPG 580
           T +  I ++  K T  TA +A +DP +   PPG
Sbjct: 14  TTVVTIAIVTTKTTTKTATFALEDPFKDLTPPG 46


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,204,668
Number of Sequences: 28952
Number of extensions: 271232
Number of successful extensions: 612
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 612
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)