Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1199
(506 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g46170.1 68415.m05741 reticulon family protein (RTNLB5) weak ... 42 2e-04
At4g23630.1 68417.m03403 reticulon family protein (RTNLB1) weak ... 42 3e-04
At3g61560.1 68416.m06895 reticulon family protein (RTNLB6) conta... 41 4e-04
At5g41600.1 68418.m05054 reticulon family protein (RTNLB4) weak ... 39 0.002
At4g11220.1 68417.m01818 reticulon family protein (RTNLB2) simil... 36 0.012
At3g19460.1 68416.m02467 reticulon family protein (RTNLB11) weak... 36 0.012
At3g10260.3 68416.m01230 reticulon family protein weak similarit... 36 0.021
At3g10260.2 68416.m01229 reticulon family protein weak similarit... 36 0.021
At3g10260.1 68416.m01228 reticulon family protein weak similarit... 36 0.021
At1g64090.1 68414.m07260 reticulon family protein (RTNLB3) weak ... 36 0.021
At2g15280.1 68415.m01742 reticulon family protein (RTNLB10) low ... 35 0.036
At4g01230.1 68417.m00162 reticulon family protein (RTNLB7) weak ... 34 0.063
At3g18260.1 68416.m02323 reticulon family protein (RTNLB9) weak ... 34 0.063
At1g70980.1 68414.m08188 asparaginyl-tRNA synthetase, cytoplasmi... 29 2.4
At1g22410.1 68414.m02802 2-dehydro-3-deoxyphosphoheptonate aldol... 28 3.1
At3g10915.2 68416.m01315 reticulon family protein low similarity... 28 4.2
At3g10915.1 68416.m01314 reticulon family protein low similarity... 28 4.2
At3g12560.1 68416.m01563 telomeric DNA-binding protein, putative... 27 5.5
At3g21700.3 68416.m02737 expressed protein 27 9.6
At3g21700.2 68416.m02735 expressed protein 27 9.6
At3g21700.1 68416.m02736 expressed protein 27 9.6
>At2g46170.1 68415.m05741 reticulon family protein (RTNLB5) weak
similarity to Nogo-C protein [Rattus norvegicus]
GI:6822251; contains Pfam profile PF02453: Reticulon
Length = 255
Score = 42.3 bits (95), Expect = 2e-04
Identities = 23/65 (35%), Positives = 35/65 (53%)
Frame = -3
Query: 435 NAALYELRRLFLVEDLVDSLKFGVLLWCLTYVGACFNGITLIILGWIALFTLPKAYEMNK 256
N A LR + L DL L V LW ++ VG FN +TL+ + ++ L T+P YE ++
Sbjct: 155 NQAFVILRSIALGRDLKKFLMVVVGLWIISVVGNWFNFLTLVYICFVILHTVPMLYEKHE 214
Query: 255 GRWTP 241
+ P
Sbjct: 215 DKVDP 219
>At4g23630.1 68417.m03403 reticulon family protein (RTNLB1) weak
similarity to Nogo-C protein [Rattus norvegicus]
GI:6822251; contains Pfam profile PF02453: Reticulon
Length = 275
Score = 41.5 bits (93), Expect = 3e-04
Identities = 22/65 (33%), Positives = 32/65 (49%)
Frame = -3
Query: 435 NAALYELRRLFLVEDLVDSLKFGVLLWCLTYVGACFNGITLIILGWIALFTLPKAYEMNK 256
N LR + DL L LW L+ +G CFN +TL + + LFT+P AY+ +
Sbjct: 176 NRGFSSLREIASGRDLKKFLIAIAGLWVLSILGGCFNFLTLAYIALVLLFTVPLAYDKYE 235
Query: 255 GRWTP 241
+ P
Sbjct: 236 DKVDP 240
>At3g61560.1 68416.m06895 reticulon family protein (RTNLB6) contains
Pfam profile PF02453: Reticulon
Length = 253
Score = 41.1 bits (92), Expect = 4e-04
Identities = 22/67 (32%), Positives = 35/67 (52%)
Frame = -3
Query: 435 NAALYELRRLFLVEDLVDSLKFGVLLWCLTYVGACFNGITLIILGWIALFTLPKAYEMNK 256
N A LR + L DL L LW ++ VG FN +TL+ + ++ L T+P YE ++
Sbjct: 155 NQAFVILRSIALGRDLKKFLMVVFGLWIISVVGNWFNFLTLVYICFVVLHTVPMLYEKHE 214
Query: 255 GRWTPTS 235
+ P +
Sbjct: 215 DKVDPVA 221
>At5g41600.1 68418.m05054 reticulon family protein (RTNLB4) weak
similarity to Nogo-C protein [Rattus norvegicus]
GI:6822251, SP|O95197 Reticulon protein 3
(Neuroendocrine-specific protein-like) {Homo sapiens};
contains Pfam profile PF02453: Reticulon
Length = 257
Score = 39.1 bits (87), Expect = 0.002
Identities = 19/57 (33%), Positives = 30/57 (52%)
Frame = -3
Query: 435 NAALYELRRLFLVEDLVDSLKFGVLLWCLTYVGACFNGITLIILGWIALFTLPKAYE 265
N L LR + +D+ + LW L+ +G+C+N +TL + LFT+P YE
Sbjct: 155 NRGLTLLRNIASGKDVKKFILVIAGLWVLSIIGSCYNFLTLFYTATVLLFTIPVLYE 211
>At4g11220.1 68417.m01818 reticulon family protein (RTNLB2) similar
to SP|Q64548 Reticulon 1 (Neuroendocrine-specific
protein) {Rattus norvegicus}; contains Pfam profile
PF02453: Reticulon
Length = 271
Score = 36.3 bits (80), Expect = 0.012
Identities = 17/57 (29%), Positives = 29/57 (50%)
Frame = -3
Query: 435 NAALYELRRLFLVEDLVDSLKFGVLLWCLTYVGACFNGITLIILGWIALFTLPKAYE 265
N + LR + D+ L LW L+ +G C++ +TL + + LFT+P Y+
Sbjct: 172 NRGISSLREIASGRDIKKFLSAIAGLWVLSILGGCYSFLTLAYIALVLLFTVPLFYD 228
>At3g19460.1 68416.m02467 reticulon family protein (RTNLB11) weak
similarity to neuroendocrine-specific protein C [Homo
sapiens] GI:307311; identical to cDNA RTNLB11
GI:32331878
Length = 200
Score = 36.3 bits (80), Expect = 0.012
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = -3
Query: 378 LKFGVLLWCLTYVGACFNGITLIILGWIALFTLPKAYE 265
L+ ++LW ++YVG N +TL+ +G + + P YE
Sbjct: 128 LQVSLVLWAISYVGTLINSLTLVYIGVLLSLSFPIVYE 165
>At3g10260.3 68416.m01230 reticulon family protein weak similarity
to Nogo-C protein [Rattus norvegicus] GI:6822251;
contains Pfam profile PF02453: Reticulon; identical to
cDNA GI:32331854
Length = 267
Score = 35.5 bits (78), Expect = 0.021
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = -3
Query: 435 NAALYELRRLFLVEDLVDSLKFGVLLWCLTYVGACFNGITLIILGWIALFTLPKAYE 265
N L L+ L +L L + LW VG+C N +T++ +G++ T+P YE
Sbjct: 168 NRGLLFLQDLACKGNLKQFLMAVIGLWVAAMVGSCCNFLTVLYIGFVGAHTMPVLYE 224
>At3g10260.2 68416.m01229 reticulon family protein weak similarity
to Nogo-C protein [Rattus norvegicus] GI:6822251;
contains Pfam profile PF02453: Reticulon; identical to
cDNA GI:32331854
Length = 247
Score = 35.5 bits (78), Expect = 0.021
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = -3
Query: 435 NAALYELRRLFLVEDLVDSLKFGVLLWCLTYVGACFNGITLIILGWIALFTLPKAYE 265
N L L+ L +L L + LW VG+C N +T++ +G++ T+P YE
Sbjct: 148 NRGLLFLQDLACKGNLKQFLMAVIGLWVAAMVGSCCNFLTVLYIGFVGAHTMPVLYE 204
>At3g10260.1 68416.m01228 reticulon family protein weak similarity
to Nogo-C protein [Rattus norvegicus] GI:6822251;
contains Pfam profile PF02453: Reticulon; identical to
cDNA GI:32331854
Length = 247
Score = 35.5 bits (78), Expect = 0.021
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = -3
Query: 435 NAALYELRRLFLVEDLVDSLKFGVLLWCLTYVGACFNGITLIILGWIALFTLPKAYE 265
N L L+ L +L L + LW VG+C N +T++ +G++ T+P YE
Sbjct: 148 NRGLLFLQDLACKGNLKQFLMAVIGLWVAAMVGSCCNFLTVLYIGFVGAHTMPVLYE 204
>At1g64090.1 68414.m07260 reticulon family protein (RTNLB3) weak
similarity to SP|O95197 Reticulon protein 3
(Neuroendocrine-specific protein-like) {Homo sapiens};
contains Pfam profile PF02453: Reticulon
Length = 255
Score = 35.5 bits (78), Expect = 0.021
Identities = 21/57 (36%), Positives = 28/57 (49%)
Frame = -3
Query: 435 NAALYELRRLFLVEDLVDSLKFGVLLWCLTYVGACFNGITLIILGWIALFTLPKAYE 265
N LR + DL L LW L+ VG+ N +TLI + + LFT+P YE
Sbjct: 151 NRGFTVLRDIASGRDLKKFLLVIAGLWVLSKVGSSCNFLTLIYIATVLLFTIPVLYE 207
>At2g15280.1 68415.m01742 reticulon family protein (RTNLB10) low
similarity to neuroendocrine-specific protein C [Homo
sapiens] GI:307311, SP|Q64548 Reticulon 1
(Neuroendocrine-specific protein) {Rattus norvegicus};
contains Pfam profile PF02453: Reticulon
Length = 201
Score = 34.7 bits (76), Expect = 0.036
Identities = 15/57 (26%), Positives = 29/57 (50%)
Frame = -3
Query: 435 NAALYELRRLFLVEDLVDSLKFGVLLWCLTYVGACFNGITLIILGWIALFTLPKAYE 265
N L R +++ + + V+LW +++VG N +T++ LG + +P YE
Sbjct: 101 NTVLAVAREIYVGRNAKQLFRVSVVLWTVSFVGNFLNFLTILYLGVVLSLLIPFLYE 157
>At4g01230.1 68417.m00162 reticulon family protein (RTNLB7) weak
similarity to SP|O95197 Reticulon protein 3
(Neuroendocrine-specific protein-like) {Homo sapiens};
contains Pfam profile PF02453: Reticulon
Length = 242
Score = 33.9 bits (74), Expect = 0.063
Identities = 15/57 (26%), Positives = 32/57 (56%)
Frame = -3
Query: 435 NAALYELRRLFLVEDLVDSLKFGVLLWCLTYVGACFNGITLIILGWIALFTLPKAYE 265
N A LR + L D+ + + + LW ++ +G F+ ++L+ + ++ + T+P YE
Sbjct: 152 NCAFATLRSIALERDIKNFVMAVIGLWLVSVIGNWFSFLSLLYICFVLIHTVPMLYE 208
>At3g18260.1 68416.m02323 reticulon family protein (RTNLB9) weak
similarity to RTN2-C [Homo sapiens] GI:3435090; contains
Pfam profile PF02453: Reticulon
Length = 225
Score = 33.9 bits (74), Expect = 0.063
Identities = 12/35 (34%), Positives = 24/35 (68%)
Frame = -3
Query: 366 VLLWCLTYVGACFNGITLIILGWIALFTLPKAYEM 262
+ L+ ++ +G FN + L+ +G++++ TLP YEM
Sbjct: 149 ISLYIVSIIGTYFNFVNLLFIGFVSMQTLPVMYEM 183
>At1g70980.1 68414.m08188 asparaginyl-tRNA synthetase, cytoplasmic,
putative / asparagine-tRNA ligase, putative similar to
SYNC1 protein GI:5670315 [SP|Q9SW96] from [Arabidopsis
thaliana]
Length = 571
Score = 28.7 bits (61), Expect = 2.4
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = -2
Query: 307 PRLDSAVHAAEGLRDEQGQVDANLELARAKINEITAKV 194
P ++ V AA + E+G+ A L++A+A EITA V
Sbjct: 228 PPTEADVEAARLIVKERGEAVAQLKVAKASKEEITASV 265
>At1g22410.1 68414.m02802 2-dehydro-3-deoxyphosphoheptonate
aldolase, putative / 3-deoxy-D-arabino-heptulosonate
7-phosphate synthase, putative / DAHP synthetase,
putative similar to 3-deoxy-D-arabino-heptulosonate
7-phosphate GI:170224 from [Nicotiana tabacum],
SP|P21357 from Solanum tuberosum; contains Pfam Class-II
DAHP synthetase family domain PF01474
Length = 527
Score = 28.3 bits (60), Expect = 3.1
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = -3
Query: 294 ALFTLPKAYEMNKGRWTPTSSWRAPRSTRSP 202
A T P + KG+W P SWR ++ + P
Sbjct: 60 ATLTKPVGVNVGKGKWAP-ESWRTKKALQQP 89
>At3g10915.2 68416.m01315 reticulon family protein low similarity to
rS-Rex-s [Rattus norvegicus] GI:1143717,
neuroendocrine-specific protein C [Homo sapiens]
GI:307311; contains Pfam profile PF02453: Reticulon
Length = 226
Score = 27.9 bits (59), Expect = 4.2
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -3
Query: 375 KFGVLLWCLTYVGACFNGITLIILGWIALFTLPKAY 268
K + LW L+ +G+ + TL+ +G I T+P Y
Sbjct: 148 KVVICLWLLSAIGSYISLCTLLYIGTILSVTIPALY 183
>At3g10915.1 68416.m01314 reticulon family protein low similarity to
rS-Rex-s [Rattus norvegicus] GI:1143717,
neuroendocrine-specific protein C [Homo sapiens]
GI:307311; contains Pfam profile PF02453: Reticulon
Length = 220
Score = 27.9 bits (59), Expect = 4.2
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -3
Query: 375 KFGVLLWCLTYVGACFNGITLIILGWIALFTLPKAY 268
K + LW L+ +G+ + TL+ +G I T+P Y
Sbjct: 142 KVVICLWLLSAIGSYISLCTLLYIGTILSVTIPALY 177
>At3g12560.1 68416.m01563 telomeric DNA-binding protein, putative
similar to telomeric DNA-binding protein 1 [Arabidopsis
thaliana] gi|13641340|gb|AAK31590
Length = 619
Score = 27.5 bits (58), Expect = 5.5
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = -2
Query: 331 LQRDHAHHPRLDSAVHAAEGLRDEQGQVDANLEL 230
L A P LDS + A+ + D + VD+NLEL
Sbjct: 426 LSERSAASPMLDSGIPHADDVIDSRNIVDSNLEL 459
>At3g21700.3 68416.m02737 expressed protein
Length = 292
Score = 26.6 bits (56), Expect = 9.6
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = -2
Query: 427 PV*AAQTVPGGGPGGLAEVRRAAVV 353
P+ A V GGG GG VRR++VV
Sbjct: 66 PIPAVDVVVGGGGGGGEFVRRSSVV 90
>At3g21700.2 68416.m02735 expressed protein
Length = 248
Score = 26.6 bits (56), Expect = 9.6
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = -2
Query: 427 PV*AAQTVPGGGPGGLAEVRRAAVV 353
P+ A V GGG GG VRR++VV
Sbjct: 66 PIPAVDVVVGGGGGGGEFVRRSSVV 90
>At3g21700.1 68416.m02736 expressed protein
Length = 291
Score = 26.6 bits (56), Expect = 9.6
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = -2
Query: 427 PV*AAQTVPGGGPGGLAEVRRAAVV 353
P+ A V GGG GG VRR++VV
Sbjct: 66 PIPAVDVVVGGGGGGGEFVRRSSVV 90
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,604,931
Number of Sequences: 28952
Number of extensions: 104356
Number of successful extensions: 443
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 443
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 908059136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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