Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1197
(463 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha ... 139 7e-34
At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha ... 139 7e-34
At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha ... 139 7e-34
At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha ... 139 7e-34
At5g10630.1 68418.m01231 elongation factor 1-alpha, putative / E... 86 1e-17
At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,... 81 3e-16
At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA) ide... 54 5e-08
At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,... 54 5e-08
At5g08650.1 68418.m01029 GTP-binding protein LepA, putative 36 0.018
At1g62750.1 68414.m07082 elongation factor Tu family protein sim... 34 0.041
At1g06220.2 68414.m00656 elongation factor Tu family protein sim... 33 0.071
At1g06220.1 68414.m00655 elongation factor Tu family protein sim... 33 0.071
At5g39900.1 68418.m04839 GTP-binding protein LepA, putative GTP-... 33 0.094
At3g22980.1 68416.m02898 elongation factor Tu family protein sim... 33 0.12
At2g45030.1 68415.m05606 mitochondrial elongation factor, putati... 33 0.12
At1g45332.1 68414.m05195 mitochondrial elongation factor, putati... 33 0.12
At4g18330.2 68417.m02719 eukaryotic translation initiation facto... 31 0.38
At4g18330.1 68417.m02718 eukaryotic translation initiation facto... 31 0.38
At4g11160.1 68417.m01808 translation initiation factor IF-2, mit... 31 0.50
At2g18720.1 68415.m02180 eukaryotic translation initiation facto... 31 0.50
At1g04170.1 68414.m00407 eukaryotic translation initiation facto... 31 0.50
At1g76825.1 68414.m08940 eukaryotic translation initiation facto... 29 1.2
At1g76810.1 68414.m08938 eukaryotic translation initiation facto... 29 1.2
At1g76720.1 68414.m08929 eukaryotic translation initiation facto... 29 1.2
At1g56070.1 68414.m06438 elongation factor 2, putative / EF-2, p... 29 1.5
At1g21160.1 68414.m02646 eukaryotic translation initiation facto... 29 1.5
At3g08870.1 68416.m01031 lectin protein kinase, putative similar... 29 2.0
At1g10920.1 68414.m01254 disease resistance protein (CC-NBS-LRR ... 27 4.7
At5g13650.2 68418.m01585 elongation factor family protein contai... 27 6.2
At5g13650.1 68418.m01584 elongation factor family protein contai... 27 6.2
At5g06810.1 68418.m00770 mitochondrial transcription termination... 27 6.2
At5g47950.1 68418.m05924 transferase family protein similar to ... 27 8.2
At5g20890.1 68418.m02481 chaperonin, putative similar to SWISS-P... 27 8.2
At3g14080.2 68416.m01780 small nuclear ribonucleoprotein, putati... 27 8.2
At3g14080.1 68416.m01779 small nuclear ribonucleoprotein, putati... 27 8.2
At2g28000.1 68415.m03393 RuBisCO subunit binding-protein alpha s... 27 8.2
>At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha
identical to SWISS-PROT:P13905 elongation factor 1-alpha
(EF-1-alpha) [Arabidopsis thaliana]
Length = 449
Score = 139 bits (337), Expect = 7e-34
Identities = 66/73 (90%), Positives = 67/73 (91%)
Frame = +3
Query: 36 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 215
MGKEK HINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K SFKYAWVL
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60
Query: 216 DKLKAERERGITI 254
DKLKAERERGITI
Sbjct: 61 DKLKAERERGITI 73
Score = 132 bits (318), Expect = 1e-31
Identities = 61/69 (88%), Positives = 65/69 (94%)
Frame = +2
Query: 257 IALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIITAGTGEFEAGISKNGQTR 436
IALWKFET+KYY T+IDAPGHRDFIKNMITGTSQADCAVLII + TG FEAGISK+GQTR
Sbjct: 75 IALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTR 134
Query: 437 EHALLAFTL 463
EHALLAFTL
Sbjct: 135 EHALLAFTL 143
>At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 139 bits (337), Expect = 7e-34
Identities = 66/73 (90%), Positives = 67/73 (91%)
Frame = +3
Query: 36 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 215
MGKEK HINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K SFKYAWVL
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60
Query: 216 DKLKAERERGITI 254
DKLKAERERGITI
Sbjct: 61 DKLKAERERGITI 73
Score = 132 bits (318), Expect = 1e-31
Identities = 61/69 (88%), Positives = 65/69 (94%)
Frame = +2
Query: 257 IALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIITAGTGEFEAGISKNGQTR 436
IALWKFET+KYY T+IDAPGHRDFIKNMITGTSQADCAVLII + TG FEAGISK+GQTR
Sbjct: 75 IALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTR 134
Query: 437 EHALLAFTL 463
EHALLAFTL
Sbjct: 135 EHALLAFTL 143
>At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 139 bits (337), Expect = 7e-34
Identities = 66/73 (90%), Positives = 67/73 (91%)
Frame = +3
Query: 36 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 215
MGKEK HINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K SFKYAWVL
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60
Query: 216 DKLKAERERGITI 254
DKLKAERERGITI
Sbjct: 61 DKLKAERERGITI 73
Score = 132 bits (318), Expect = 1e-31
Identities = 61/69 (88%), Positives = 65/69 (94%)
Frame = +2
Query: 257 IALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIITAGTGEFEAGISKNGQTR 436
IALWKFET+KYY T+IDAPGHRDFIKNMITGTSQADCAVLII + TG FEAGISK+GQTR
Sbjct: 75 IALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTR 134
Query: 437 EHALLAFTL 463
EHALLAFTL
Sbjct: 135 EHALLAFTL 143
>At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 139 bits (337), Expect = 7e-34
Identities = 66/73 (90%), Positives = 67/73 (91%)
Frame = +3
Query: 36 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 215
MGKEK HINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K SFKYAWVL
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60
Query: 216 DKLKAERERGITI 254
DKLKAERERGITI
Sbjct: 61 DKLKAERERGITI 73
Score = 132 bits (318), Expect = 1e-31
Identities = 61/69 (88%), Positives = 65/69 (94%)
Frame = +2
Query: 257 IALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIITAGTGEFEAGISKNGQTR 436
IALWKFET+KYY T+IDAPGHRDFIKNMITGTSQADCAVLII + TG FEAGISK+GQTR
Sbjct: 75 IALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTR 134
Query: 437 EHALLAFTL 463
EHALLAFTL
Sbjct: 135 EHALLAFTL 143
>At5g10630.1 68418.m01231 elongation factor 1-alpha, putative /
EF-1-alpha, putative contains similarity to
SWISS-PROT:Q9YAV0 elongation factor 1-alpha (EF-1-alpha)
[Aeropyrum pernix]
Length = 667
Score = 85.8 bits (203), Expect = 1e-17
Identities = 36/68 (52%), Positives = 51/68 (75%)
Frame = +3
Query: 51 THINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKA 230
+ +N+ ++GHVDSGKST +G L++ G I ++ + K+EKEA+ GKGSF YAW LD+
Sbjct: 238 SQLNLAIVGHVDSGKSTLSGRLLHLLGRISQKQMHKYEKEAKLQGKGSFAYAWALDESAE 297
Query: 231 ERERGITI 254
ERERGIT+
Sbjct: 298 ERERGITM 305
Score = 76.2 bits (179), Expect = 1e-14
Identities = 32/64 (50%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +2
Query: 257 IALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIITAGTGEFEAGISK-NGQT 433
+A+ F + +++V ++D+PGH+DF+ NMI G +QAD A+L+I A G FEAG GQT
Sbjct: 307 VAVAYFNSKRHHVVLLDSPGHKDFVPNMIAGATQADAAILVIDASVGAFEAGFDNLKGQT 366
Query: 434 REHA 445
REHA
Sbjct: 367 REHA 370
>At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,
putative similar to EF-1-alpha-related GTP-binding
protein gi|1009232|gb|AAA79032
Length = 532
Score = 81.4 bits (192), Expect = 3e-16
Identities = 37/64 (57%), Positives = 45/64 (70%)
Frame = +2
Query: 272 FETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIITAGTGEFEAGISKNGQTREHALL 451
FET TI+DAPGH+ ++ NMI+G SQAD VL+I+A GEFE G + GQTREH L
Sbjct: 174 FETESTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGYERGGQTREHVQL 233
Query: 452 AFTL 463
A TL
Sbjct: 234 AKTL 237
Score = 72.1 bits (169), Expect = 2e-13
Identities = 30/70 (42%), Positives = 50/70 (71%)
Frame = +3
Query: 45 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 224
+K H+N+V IGHVD+GKST G +++ G +D R I+K+EKEA++ + S+ A+++D
Sbjct: 98 KKRHLNVVFIGHVDAGKSTIGGQILFLSGQVDDRQIQKYEKEAKDKSRESWYMAYIMDTN 157
Query: 225 KAERERGITI 254
+ ER +G T+
Sbjct: 158 EEERLKGKTV 167
>At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA)
identical to SWISS-PROT:P17745 elongation factor Tu,
chloroplast precursor (EF-Tu) [Arabidopsis thaliana]
Length = 476
Score = 54.0 bits (124), Expect = 5e-08
Identities = 25/62 (40%), Positives = 37/62 (59%)
Frame = +2
Query: 269 KFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIITAGTGEFEAGISKNGQTREHAL 448
++ET + +D PGH D++KNMITG +Q D A+L+++ G QT+EH L
Sbjct: 136 EYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMP-------QTKEHIL 188
Query: 449 LA 454
LA
Sbjct: 189 LA 190
Score = 39.1 bits (87), Expect = 0.001
Identities = 17/45 (37%), Positives = 25/45 (55%)
Frame = +3
Query: 33 KMGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEK 167
K ++K H+NI IGHVD GK+T T L I +K+++
Sbjct: 72 KFERKKPHVNIGTIGHVDHGKTTLTAALTMALASIGSSVAKKYDE 116
>At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,
putative similar to mitochondrial elongation factor Tu
[Arabidopsis thaliana] gi|1149571|emb|CAA61511
Length = 454
Score = 54.0 bits (124), Expect = 5e-08
Identities = 25/62 (40%), Positives = 38/62 (61%)
Frame = +2
Query: 269 KFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIITAGTGEFEAGISKNGQTREHAL 448
++ET+K + +D PGH D++KNMITG +Q D +L+++ G QT+EH L
Sbjct: 124 EYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSGPDGPMP-------QTKEHIL 176
Query: 449 LA 454
LA
Sbjct: 177 LA 178
Score = 33.5 bits (73), Expect = 0.071
Identities = 24/71 (33%), Positives = 32/71 (45%)
Frame = +3
Query: 42 KEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 221
+ K H+N+ IGHVD GK+T T + K E GK +DK
Sbjct: 63 RNKPHVNVGTIGHVDHGKTTLTAAI---------------TKVLAEEGKAKAIAFDEIDK 107
Query: 222 LKAERERGITI 254
E++RGITI
Sbjct: 108 APEEKKRGITI 118
>At5g08650.1 68418.m01029 GTP-binding protein LepA, putative
Length = 681
Score = 35.5 bits (78), Expect = 0.018
Identities = 40/127 (31%), Positives = 53/127 (41%), Gaps = 1/127 (0%)
Frame = +3
Query: 60 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 239
N +I H+D GKST L+ G + R + K F LD + ERE
Sbjct: 88 NFSIIAHIDHGKSTLADKLLQVTGTVQNRDM-----------KEQF-----LDNMDLERE 131
Query: 240 RGITIILLSGSSKLASTMLP-SLMLLDTEISSRT*SQEPLRLIALCSS*LPVPVNSKLVS 416
RGITI L + + P L L+DT S E R +A C L V S+ V
Sbjct: 132 RGITIKLQAARMRYVYEDTPFCLNLIDTP-GHVDFSYEVSRSLAACEGALLVVDASQGVE 190
Query: 417 LRTVKPV 437
+T+ V
Sbjct: 191 AQTLANV 197
Score = 30.7 bits (66), Expect = 0.50
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +2
Query: 272 FETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIITAGTG 397
+E + + + +ID PGH DF + + + A+L++ A G
Sbjct: 147 YEDTPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQG 188
>At1g62750.1 68414.m07082 elongation factor Tu family protein
similar to elongation factor G SP:P34811 [Glycine max
(Soybean)]
Length = 783
Score = 34.3 bits (75), Expect = 0.041
Identities = 22/69 (31%), Positives = 37/69 (53%)
Frame = +3
Query: 48 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK 227
K + NI ++ H+D+GK+TTT ++Y G + E+ +G+ W ++
Sbjct: 94 KDYRNIGIMAHIDAGKTTTTERILYYTGR---------NYKIGEVHEGTATMDW----ME 140
Query: 228 AERERGITI 254
E+ERGITI
Sbjct: 141 QEQERGITI 149
>At1g06220.2 68414.m00656 elongation factor Tu family protein
similar to Cryptosporidium parvum elongation factor-2
GB:U21667 GI:706974 from [Cryptosporidium parvum]
Length = 987
Score = 33.5 bits (73), Expect = 0.071
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = +2
Query: 278 TSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIITAGTG 397
+ Y I+D PGH +F M AD AVLI+ A G
Sbjct: 206 SKSYLCNIMDTPGHVNFSDEMTASLRLADGAVLIVDAAEG 245
>At1g06220.1 68414.m00655 elongation factor Tu family protein
similar to Cryptosporidium parvum elongation factor-2
GB:U21667 GI:706974 from [Cryptosporidium parvum]
Length = 987
Score = 33.5 bits (73), Expect = 0.071
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = +2
Query: 278 TSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIITAGTG 397
+ Y I+D PGH +F M AD AVLI+ A G
Sbjct: 206 SKSYLCNIMDTPGHVNFSDEMTASLRLADGAVLIVDAAEG 245
>At5g39900.1 68418.m04839 GTP-binding protein LepA, putative
GTP-binding protein GUF1 - Saccharomyces cerevisiae,
PIR:S50374
Length = 661
Score = 33.1 bits (72), Expect = 0.094
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +2
Query: 275 ETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIITAGTG 397
E S Y + +ID PGH DF + S A+L++ A G
Sbjct: 131 EASGYLLNLIDTPGHVDFSYEVSRSLSACQGALLVVDAAQG 171
Score = 30.3 bits (65), Expect = 0.66
Identities = 29/77 (37%), Positives = 35/77 (45%)
Frame = +3
Query: 24 D*PKMGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKY 203
D K EK N +I H+D GKST L+ G I K G G +Y
Sbjct: 57 DLTKFPSEKIR-NFSIIAHIDHGKSTLADRLMELTGTIKK-------------GHGQPQY 102
Query: 204 AWVLDKLKAERERGITI 254
LDKL +RERGIT+
Sbjct: 103 ---LDKL--QRERGITV 114
>At3g22980.1 68416.m02898 elongation factor Tu family protein
similar to eukaryotic translation elongation factor 2
GB:NP_001952 [Homo sapiens]
Length = 1015
Score = 32.7 bits (71), Expect = 0.12
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +3
Query: 60 NIVVIGHVDSGKSTTTGHLIYKCGG 134
NI ++ HVD GK+T HLI GG
Sbjct: 11 NICILAHVDHGKTTLADHLIASSGG 35
Score = 32.7 bits (71), Expect = 0.12
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +2
Query: 287 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIITAGTG 397
Y + +ID+PGH DF + T +D A++++ A G
Sbjct: 74 YSLNLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEG 110
>At2g45030.1 68415.m05606 mitochondrial elongation factor, putative
similar to SP|P25039 Elongation factor G 1,
mitochondrial precursor (mEF-G-1) {Saccharomyces
cerevisiae}; contains Pfam profiles PF00009: Elongation
factor Tu GTP binding domain, PF03764: Elongation factor
G domain IV, PF00679: Elongation factor G C-terminus
Length = 754
Score = 32.7 bits (71), Expect = 0.12
Identities = 23/65 (35%), Positives = 35/65 (53%)
Frame = +3
Query: 60 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 239
NI + H+DSGK+T T +++ G R E E ++ G G+ +D + ERE
Sbjct: 67 NIGISAHIDSGKTTLTERVLFYTG----RIHEIHEVRGRD-GVGA-----KMDSMDLERE 116
Query: 240 RGITI 254
+GITI
Sbjct: 117 KGITI 121
Score = 31.5 bits (68), Expect = 0.29
Identities = 17/52 (32%), Positives = 25/52 (48%)
Frame = +2
Query: 287 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIITAGTGEFEAGISKNGQTREH 442
Y V IID PGH DF + D A+L++ + G I+ + Q R +
Sbjct: 133 YKVNIIDTPGHVDFTIEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRY 184
>At1g45332.1 68414.m05195 mitochondrial elongation factor, putative
similar to mitochondrial elongation factor GI:3917 from
[Saccharomyces cerevisiae]
Length = 754
Score = 32.7 bits (71), Expect = 0.12
Identities = 23/65 (35%), Positives = 35/65 (53%)
Frame = +3
Query: 60 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 239
NI + H+DSGK+T T +++ G R E E ++ G G+ +D + ERE
Sbjct: 67 NIGISAHIDSGKTTLTERVLFYTG----RIHEIHEVRGRD-GVGA-----KMDSMDLERE 116
Query: 240 RGITI 254
+GITI
Sbjct: 117 KGITI 121
Score = 31.5 bits (68), Expect = 0.29
Identities = 17/52 (32%), Positives = 25/52 (48%)
Frame = +2
Query: 287 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIITAGTGEFEAGISKNGQTREH 442
Y V IID PGH DF + D A+L++ + G I+ + Q R +
Sbjct: 133 YKVNIIDTPGHVDFTIEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRY 184
>At4g18330.2 68417.m02719 eukaryotic translation initiation factor 2
subunit 3, putative / eIF2S3, putative / eIF-2-gamma,
putative similar to SP|Q09130 Eukaryotic translation
initiation factor 2 gamma subunit (eIF-2- gamma)
{Schizosaccharomyces pombe}; contains Pfam profile
PF00009: Elongation factor Tu GTP binding domain;
isoform predicted to contain a TG non-consensus acceptor
splice site.
Length = 471
Score = 31.1 bits (67), Expect = 0.38
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +2
Query: 278 TSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIITA 388
T + +V+ +D PGH + M+ G + D A+L+I A
Sbjct: 124 TLRRHVSCVDCPGHDILMATMLNGAAIVDGALLLIAA 160
>At4g18330.1 68417.m02718 eukaryotic translation initiation factor 2
subunit 3, putative / eIF2S3, putative / eIF-2-gamma,
putative similar to SP|Q09130 Eukaryotic translation
initiation factor 2 gamma subunit (eIF-2- gamma)
{Schizosaccharomyces pombe}; contains Pfam profile
PF00009: Elongation factor Tu GTP binding domain;
isoform predicted to contain a TG non-consensus acceptor
splice site.
Length = 284
Score = 31.1 bits (67), Expect = 0.38
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +2
Query: 278 TSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIITA 388
T + +V+ +D PGH + M+ G + D A+L+I A
Sbjct: 124 TLRRHVSCVDCPGHDILMATMLNGAAIVDGALLLIAA 160
>At4g11160.1 68417.m01808 translation initiation factor IF-2,
mitochondrial, putative similar to SP|P46198|IF2M_BOVIN
Translation initiation factor IF-2, mitochondrial
precursor (IF-2Mt) (IF-2(Mt)) {Bos taurus}
Length = 743
Score = 30.7 bits (66), Expect = 0.50
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +2
Query: 293 VTIIDAPGHRDFIKNMITGTSQADCAVLIITAGTG 397
+T +D PGH F + G + D VL++ A G
Sbjct: 270 ITFLDTPGHAAFSEMRARGAAVTDIVVLVVAADDG 304
>At2g18720.1 68415.m02180 eukaryotic translation initiation factor 2
subunit 3, putative / eIF2S3, putative / eIF-2-gamma,
putative
Length = 465
Score = 30.7 bits (66), Expect = 0.50
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +2
Query: 290 YVTIIDAPGHRDFIKNMITGTSQADCAVLIITA 388
+V+ +D PGH + M+ G + D A+LII A
Sbjct: 120 HVSFVDCPGHDILMATMLNGAAIMDGALLIIAA 152
>At1g04170.1 68414.m00407 eukaryotic translation initiation factor 2
subunit 3, putative / eIF2S3, putative / eIF-2-gamma,
putative similar to gb|U37354 from S. pombe. ESTs
gb|T41979, gb|N37284 and gb|N37529 come from this gene
Length = 465
Score = 30.7 bits (66), Expect = 0.50
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Frame = +2
Query: 272 FETSKY----YVTIIDAPGHRDFIKNMITGTSQADCAVLIITA 388
FE SK +V+ +D PGH + M+ G + D A+L+I A
Sbjct: 112 FENSKMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAA 154
>At1g76825.1 68414.m08940 eukaryotic translation initiation factor 2
family protein / eIF-2 family protein similar to
SP|O60841 Translation initiation factor IF-2 {Homo
sapiens}; contains Pfam profile PF00009: Elongation
factor Tu GTP binding domain
Length = 630
Score = 29.5 bits (63), Expect = 1.2
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +2
Query: 299 IIDAPGHRDFIKNMITGTSQADCAVLII 382
+ID PGH F G+S D A+L++
Sbjct: 113 VIDTPGHESFTNLRSRGSSLCDLAILVV 140
>At1g76810.1 68414.m08938 eukaryotic translation initiation factor 2
family protein / eIF-2 family protein similar to IF2
protein [Drosophila melanogaster] GI:7108770; contains
Pfam profile PF03144: Elongation factor Tu domain 2
Length = 1294
Score = 29.5 bits (63), Expect = 1.2
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +2
Query: 299 IIDAPGHRDFIKNMITGTSQADCAVLII 382
+ID PGH F G+S D A+L++
Sbjct: 772 VIDTPGHESFTNLRSRGSSLCDLAILVV 799
>At1g76720.1 68414.m08929 eukaryotic translation initiation factor 2
family protein / eIF-2 family protein similar to
SP|O60841 Translation initiation factor IF-2 {Homo
sapiens}; contains Pfam profiles PF00009: Elongation
factor Tu GTP binding domain, PF03144: Elongation factor
Tu domain 2
Length = 1201
Score = 29.5 bits (63), Expect = 1.2
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +2
Query: 299 IIDAPGHRDFIKNMITGTSQADCAVLII 382
+ID PGH F G+S D A+L++
Sbjct: 705 VIDTPGHESFTNLRSRGSSLCDLAILVV 732
>At1g56070.1 68414.m06438 elongation factor 2, putative / EF-2,
putative similar to ELONGATION FACTOR 2 GB:O14460 from
[Schizosaccharomyces pombe]
Length = 843
Score = 29.1 bits (62), Expect = 1.5
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +3
Query: 60 NIVVIGHVDSGKSTTTGHLIYKCG 131
N+ VI HVD GKST T L+ G
Sbjct: 21 NMSVIAHVDHGKSTLTDSLVAAAG 44
Score = 29.1 bits (62), Expect = 1.5
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = +2
Query: 281 SKYYVTIIDAPGHRDFIKNMITGTSQADCAVLII 382
++Y + +ID+PGH DF + D A++++
Sbjct: 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVV 129
>At1g21160.1 68414.m02646 eukaryotic translation initiation factor 2
family protein / eIF-2 family protein similar to
SP|O60841 Translation initiation factor IF-2 {Homo
sapiens}; contains Pfam profiles PF00009: Elongation
factor Tu GTP binding domain, PF03144: Elongation factor
Tu domain 2
Length = 1088
Score = 29.1 bits (62), Expect = 1.5
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +2
Query: 293 VTIIDAPGHRDFIKNMITGTSQADCAVLII 382
+ +ID PGH F G++ D A+L++
Sbjct: 558 ILVIDTPGHESFTNLRSRGSNLCDLAILVV 587
>At3g08870.1 68416.m01031 lectin protein kinase, putative similar to
receptor lectin kinase 3 [Arabidopsis thaliana]
gi|4100060|gb|AAD00733; contains protein kinase domain,
Pfam:PF00069; contains legume lectins alpha and beta
domains, Pfam:PF00138 and Pfam:PF00139
Length = 693
Score = 28.7 bits (61), Expect = 2.0
Identities = 14/60 (23%), Positives = 29/60 (48%)
Frame = -1
Query: 421 LRDTSFEFTGTGSYDEHSAISLRGSCDHVLDEISVSRSINDGNIVLASFELPESNMIVIP 242
+R+ E G + ++L+G C H + + + I +G++ ++ P N IV+P
Sbjct: 406 VREFMAEIESLGRLGHKNLVNLQGWCKHKNELLLIYDYIPNGSLDSLLYQTPRRNGIVLP 465
>At1g10920.1 68414.m01254 disease resistance protein (CC-NBS-LRR
class), putative domain signature CC-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 727
Score = 27.5 bits (58), Expect = 4.7
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +3
Query: 192 SFKYAWVLDKLKAERERGITIILLSGSSKLASTMLPSLMLLD 317
S KYA V+D L + R +++ + GSS S+ L L L+
Sbjct: 563 STKYASVMDLLHMTKLRELSLFITDGSSDTLSSSLGQLRSLE 604
>At5g13650.2 68418.m01585 elongation factor family protein contains
Pfam profiles: PF00009 elongation factor Tu GTP binding
domain,PF00679 elongation factor G C-terminus, PF03144
elongation factor Tu domain 2
Length = 676
Score = 27.1 bits (57), Expect = 6.2
Identities = 20/66 (30%), Positives = 32/66 (48%)
Frame = +3
Query: 60 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 239
NI ++ HVD GK+T ++ + K ++ Q M + ++D ERE
Sbjct: 85 NIAIVAHVDHGKTTLVDSMLRQA---------KVFRDNQVMQER------IMDSNDLERE 129
Query: 240 RGITII 257
RGITI+
Sbjct: 130 RGITIL 135
>At5g13650.1 68418.m01584 elongation factor family protein contains
Pfam profiles: PF00009 elongation factor Tu GTP binding
domain,PF00679 elongation factor G C-terminus, PF03144
elongation factor Tu domain 2
Length = 675
Score = 27.1 bits (57), Expect = 6.2
Identities = 20/66 (30%), Positives = 32/66 (48%)
Frame = +3
Query: 60 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 239
NI ++ HVD GK+T ++ + K ++ Q M + ++D ERE
Sbjct: 84 NIAIVAHVDHGKTTLVDSMLRQA---------KVFRDNQVMQER------IMDSNDLERE 128
Query: 240 RGITII 257
RGITI+
Sbjct: 129 RGITIL 134
>At5g06810.1 68418.m00770 mitochondrial transcription termination
factor-related / mTERF-related contains Pfam profile
PF02536: mTERF
Length = 1141
Score = 27.1 bits (57), Expect = 6.2
Identities = 16/52 (30%), Positives = 28/52 (53%)
Frame = +3
Query: 111 HLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIILLS 266
H + G+D + I K KEA+E+ S++ + K+KA + G + + LS
Sbjct: 174 HHVLCYSGVDPKRIGKIFKEAREV--FSYETGVLASKIKAYEDLGFSRLFLS 223
>At5g47950.1 68418.m05924 transferase family protein similar to
deacetylvindoline 4-O-acetyltransferase [Catharanthus
roseus][GI:4091808][PMID:9681034],
acetyl-CoA:benzylalcohol acetyltranferase [Clarkia
concinna][GI:6166328][PMID:10588064]
Length = 426
Score = 26.6 bits (56), Expect = 8.2
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = -1
Query: 370 SAISLRGSCDHVLDEISVSRSINDGNIVLASFELPESNMIVIPRS 236
S + + GS LD ++V DG + A LP+ NM+++ +S
Sbjct: 367 SPVWVAGSVSPNLDYVTVLIDSKDGQGIEAWVTLPQENMLLLEQS 411
>At5g20890.1 68418.m02481 chaperonin, putative similar to
SWISS-PROT:P78371- T-complex protein 1, beta subunit
(TCP-1-beta) [Homo sapiens]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 527
Score = 26.6 bits (56), Expect = 8.2
Identities = 17/54 (31%), Positives = 28/54 (51%)
Frame = -1
Query: 442 MLTGLTVLRDTSFEFTGTGSYDEHSAISLRGSCDHVLDEISVSRSINDGNIVLA 281
++ + + D F+G + +I LRG+ HVLDE RS++D VL+
Sbjct: 343 LIEEIMIGEDKLIHFSGC-EMGQACSIVLRGASHHVLDE--AERSLHDALCVLS 393
>At3g14080.2 68416.m01780 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to U6
snRNA-associated Sm-like protein LSm1 (Small nuclear
ribonuclear CaSm, Cancer-associated Sm-like) [Homo
sapiens] SWISS-PROT:O15116; contains Pfam profile:
PF01423 Sm protein
Length = 128
Score = 26.6 bits (56), Expect = 8.2
Identities = 12/41 (29%), Positives = 24/41 (58%)
Frame = +3
Query: 60 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEM 182
N+V+IG +D+ + H+I + + + +K E+EA E+
Sbjct: 75 NVVLIGELDTEREELPPHMI-RVSEAEIKRAQKVEREASEL 114
>At3g14080.1 68416.m01779 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to U6
snRNA-associated Sm-like protein LSm1 (Small nuclear
ribonuclear CaSm, Cancer-associated Sm-like) [Homo
sapiens] SWISS-PROT:O15116; contains Pfam profile:
PF01423 Sm protein
Length = 128
Score = 26.6 bits (56), Expect = 8.2
Identities = 12/41 (29%), Positives = 24/41 (58%)
Frame = +3
Query: 60 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEM 182
N+V+IG +D+ + H+I + + + +K E+EA E+
Sbjct: 75 NVVLIGELDTEREELPPHMI-RVSEAEIKRAQKVEREASEL 114
>At2g28000.1 68415.m03393 RuBisCO subunit binding-protein alpha
subunit, chloroplast / 60 kDa chaperonin alpha subunit /
CPN-60 alpha identical to SWISS-PROT:P21238- RuBisCO
subunit binding-protein alpha subunit, chloroplast
precursor (60 kDa chaperonin alpha subunit, CPN-60
alpha) [Arabidopsis thaliana]
Length = 586
Score = 26.6 bits (56), Expect = 8.2
Identities = 11/41 (26%), Positives = 22/41 (53%)
Frame = -1
Query: 385 SYDEHSAISLRGSCDHVLDEISVSRSINDGNIVLASFELPE 263
++D+HS +L+ D + D + ++ N+VL F P+
Sbjct: 52 AFDQHSRAALQAGIDKLADCVGLTLGPRGRNVVLDEFGSPK 92
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,922,405
Number of Sequences: 28952
Number of extensions: 198439
Number of successful extensions: 627
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 585
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 624
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 772134480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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