Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1196
         (538 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7770| Best HMM Match : Aldolase_II (HMM E-Value=2.6e-12)            36   0.028
SB_45935| Best HMM Match : Aldolase_II (HMM E-Value=1.1e-27)           35   0.037
SB_8335| Best HMM Match : Dehydrin (HMM E-Value=7.2)                   33   0.15 
SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.26 
SB_40358| Best HMM Match : Pox_A32 (HMM E-Value=0.058)                 31   0.60 
SB_40000| Best HMM Match : Pox_A32 (HMM E-Value=0.053)                 30   1.4  
SB_35539| Best HMM Match : RVT_1 (HMM E-Value=1.7e-07)                 30   1.4  
SB_21896| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_46179| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.8  
SB_34736| Best HMM Match : WCCH (HMM E-Value=6.7)                      29   1.8  
SB_58669| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.4  
SB_12094| Best HMM Match : Myb_DNA-binding (HMM E-Value=0.00041)       29   2.4  
SB_6869| Best HMM Match : Peptidase_A17 (HMM E-Value=2.8026e-45)       29   2.4  
SB_19572| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_34319| Best HMM Match : C2 (HMM E-Value=0.003)                      29   3.2  
SB_40461| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.6  
SB_2102| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.6  
SB_58782| Best HMM Match : Hormone_5 (HMM E-Value=2.1)                 27   7.3  
SB_53527| Best HMM Match : zf-C3HC4 (HMM E-Value=3.3e-12)              27   9.7  
SB_45482| Best HMM Match : BTB (HMM E-Value=5.6e-11)                   27   9.7  
SB_14155| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  

>SB_7770| Best HMM Match : Aldolase_II (HMM E-Value=2.6e-12)
          Length = 716

 Score = 35.5 bits (78), Expect = 0.028
 Identities = 15/35 (42%), Positives = 24/35 (68%)
 Frame = +2

Query: 392 SRPADIDADVREMERRKRVEALMSSKLFREELERV 496
           S P  I+ DVR ++ R+RV  ++  ++FREELE +
Sbjct: 231 STPDQINRDVRGLKLRQRVSIVLGDEVFREELEEI 265


>SB_45935| Best HMM Match : Aldolase_II (HMM E-Value=1.1e-27)
          Length = 468

 Score = 35.1 bits (77), Expect = 0.037
 Identities = 15/34 (44%), Positives = 24/34 (70%)
 Frame = +2

Query: 395 RPADIDADVREMERRKRVEALMSSKLFREELERV 496
           RP D+  DVR ++ R+RV  +++ K+ REELE +
Sbjct: 29  RPDDVLRDVRGLKLRQRVSLVLNDKVLREELEDI 62


>SB_8335| Best HMM Match : Dehydrin (HMM E-Value=7.2)
          Length = 531

 Score = 33.1 bits (72), Expect = 0.15
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = +2

Query: 395 RPADIDADVREMERRKRVEALMSSKLFREELERVPSTSDARGRRRSAP 538
           RP + D D R+ ERR+R +    +++ R+  ER       RGRR   P
Sbjct: 314 RPRETDRDPRDKERRERRDNSRENQVRRDNDERDHPQDRIRGRREEKP 361


>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1272

 Score = 32.3 bits (70), Expect = 0.26
 Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
 Frame = +2

Query: 332  RRSRTAPGPCPPRRKTSA*SSRPADIDADVREMERRKRVEALMSSKLFREEL----ERVP 499
            RR R +P P PPRR+  + S+ P  + +      +RKR     S +  R ++    E+  
Sbjct: 920  RRRRKSPSPSPPRRRRRSPSNSPPPMRSSPLPPPQRKRASTPPSPRRARRKVASPEEQDR 979

Query: 500  STSDARGRRRSAP 538
              S+ R  R  +P
Sbjct: 980  QKSNGRNSRSVSP 992


>SB_40358| Best HMM Match : Pox_A32 (HMM E-Value=0.058)
          Length = 874

 Score = 31.1 bits (67), Expect = 0.60
 Identities = 24/66 (36%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
 Frame = +2

Query: 278 LA*QINRLELSEWLRRTQRRSRTAPGPCPPRRKTSA*SSRPADI-DADVREMERRKR--V 448
           LA  +  L + +WLR  QRR+  AP    PR   +   S+P     +     ERRKR  V
Sbjct: 679 LANSVKNLHVRQWLRSRQRRASRAPN--RPRPDLTLDESKPEGAWRSGTESTERRKRCFV 736

Query: 449 EALMSS 466
             L SS
Sbjct: 737 SPLRSS 742


>SB_40000| Best HMM Match : Pox_A32 (HMM E-Value=0.053)
          Length = 946

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
 Frame = -1

Query: 409  DVGRTAASSARLPPRWTGARCRSGSSLSPSQPFRQLESIDLSSKTW--VSNPVAESFRSH 236
            D  R AA+  R   + + A CRSG S S S+ FR      + +  +  V + V + ++ H
Sbjct: 835  DSARKAAAGGRTADQGSAA-CRSGDSASRSRTFRHEGPTHICTSVYRIVDDAVEQDYKDH 893

Query: 235  AR 230
             R
Sbjct: 894  HR 895


>SB_35539| Best HMM Match : RVT_1 (HMM E-Value=1.7e-07)
          Length = 1105

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 19/66 (28%), Positives = 32/66 (48%)
 Frame = +2

Query: 335 RSRTAPGPCPPRRKTSA*SSRPADIDADVREMERRKRVEALMSSKLFREELERVPSTSDA 514
           +++TA     P+        +P    +D+ E+ R+  VE+L+      EEL   PS+  A
Sbjct: 55  KAKTAEQGARPKTLAVGGIKKPKVTQSDILELSRQ--VESLLEENRRLEELAGSPSSRSA 112

Query: 515 RGRRRS 532
           R  RR+
Sbjct: 113 RKERRA 118


>SB_21896| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 759

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 17/42 (40%), Positives = 22/42 (52%)
 Frame = -1

Query: 331 LSPSQPFRQLESIDLSSKTWVSNPVAESFRSHARSSRWPGVA 206
           L P  PF++LES+ +  K  VS  V+E     A S   PG A
Sbjct: 451 LEPMLPFKRLESLPIPDKVTVSMTVSEPAVLTALSDLHPGKA 492


>SB_46179| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4856

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 14/40 (35%), Positives = 25/40 (62%), Gaps = 4/40 (10%)
 Frame = +2

Query: 335  RSRTAPGPCPPRRKTSA*SSRPAD----IDADVREMERRK 442
            + +  P P PP++++ +  SR +D    IDA + EME+R+
Sbjct: 4691 KPKKVPPPTPPKKRSGSWKSRDSDSDSSIDAVLDEMEKRR 4730


>SB_34736| Best HMM Match : WCCH (HMM E-Value=6.7)
          Length = 239

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 25/67 (37%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
 Frame = +2

Query: 278 LA*QINRLELSEWLRRTQRR-SRTAPGPCPPRRKTSA*SSRPADI-DADVREMERRKR-- 445
           LA  I  L    WLR  QRR +R +  P  PR   +   S+P     +     ERRKR  
Sbjct: 103 LANSIKNLHARLWLRSRQRRATRESRAPNRPRPDLTLDESKPEGAWQSGTESTERRKRRF 162

Query: 446 VEALMSS 466
           V  L SS
Sbjct: 163 VSPLRSS 169


>SB_58669| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3038

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
 Frame = +3

Query: 249  DSATGLLTQV--LLDK---SIDSSCRNG*DGLRDDPERHRAPVHRGGRRALEAAVRPTST 413
            ++A  L++ +  +LDK   ++   C N  D +   PE+HRA      +  L    RPT++
Sbjct: 1104 ENAVKLVSDIREVLDKGGFNLTKWCSNDKDVIASVPEKHRA------KSMLNELERPTTS 1157

Query: 414  PMSAKWN 434
             +  KWN
Sbjct: 1158 TLGLKWN 1164


>SB_12094| Best HMM Match : Myb_DNA-binding (HMM E-Value=0.00041)
          Length = 754

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 17/51 (33%), Positives = 27/51 (52%)
 Frame = +2

Query: 206 RYAGPSAGPCMTPEGLGYRITNPGLA*QINRLELSEWLRRTQRRSRTAPGP 358
           R  GP++G   TP        +PGL   +NR ++  ++ R ++  R APGP
Sbjct: 654 RPLGPASGG--TPSA---DFISPGLLQHVNRHDVDTYIHRIKQGKRHAPGP 699


>SB_6869| Best HMM Match : Peptidase_A17 (HMM E-Value=2.8026e-45)
          Length = 811

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
 Frame = +3

Query: 249 DSATGLLTQV--LLDK---SIDSSCRNG*DGLRDDPERHRAPVHRGGRRALEAAVRPTST 413
           ++A  L++ +  +LDK   ++   C N  D +   PE+HRA      +  L    RPT++
Sbjct: 14  ENAVKLVSDIREVLDKGGFNLTKWCSNDKDVIASVPEKHRA------KSMLNELERPTTS 67

Query: 414 PMSAKWN 434
            +  KWN
Sbjct: 68  TLGLKWN 74


>SB_19572| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 823

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +2

Query: 335 RSRTAPGPCPPRRKTSA*SSRPADIDADVREMERRKRVEAL 457
           R+R  P P PP+R  S   S P  +    R + R K V A+
Sbjct: 530 RARQQPPPPPPQRPASPSHSGPVPVKTADRWLARGKNVNAM 570


>SB_34319| Best HMM Match : C2 (HMM E-Value=0.003)
          Length = 557

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -1

Query: 286 SSKTWVSNPVAESFRSHA 233
           +S+ WVS  +A+ FRSHA
Sbjct: 124 TSRAWVSESIADDFRSHA 141


>SB_40461| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 611

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 20/62 (32%), Positives = 27/62 (43%)
 Frame = -1

Query: 406 VGRTAASSARLPPRWTGARCRSGSSLSPSQPFRQLESIDLSSKTWVSNPVAESFRSHARS 227
           V R   +  R    W    CR GSS S  +P    E   L + T  ++P  +S R  A+ 
Sbjct: 262 VVRVRVAVRRWRNTWWADSCRGGSSASADEP----EPAGLVAVTLDASPAYQSLRHLAKL 317

Query: 226 SR 221
           SR
Sbjct: 318 SR 319


>SB_2102| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2396

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -1

Query: 331 LSPSQPFRQLESIDLSSKTWVSNPVAESFRSHARSSRWP 215
           L P  PF++LES+ +  K  VS  V+E     A S + P
Sbjct: 249 LEPMLPFKRLESLPIPDKVTVSMTVSEPAVLTALSGKAP 287


>SB_58782| Best HMM Match : Hormone_5 (HMM E-Value=2.1)
          Length = 215

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +2

Query: 134 VLSACYDRRSNLCVNFVCSDHLICRYAG 217
           V+  C+     LC+N  C  H+I  ++G
Sbjct: 85  VIVTCFQTPHRLCINGTCMGHMIPMFSG 112


>SB_53527| Best HMM Match : zf-C3HC4 (HMM E-Value=3.3e-12)
          Length = 1290

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = -3

Query: 488 PILRGTASRT*ELRRASGVPFRGHRRRCRPDGCFKRSSSSS 366
           P+L G +    +L +   +P  GH+ +  P  C + +SSS+
Sbjct: 608 PLLGGDSELEAQLTKGKFIPSPGHKGQVHPIHCSQSASSSN 648


>SB_45482| Best HMM Match : BTB (HMM E-Value=5.6e-11)
          Length = 3037

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = +3

Query: 375 RRALEAAVRPTSTPMSAKWNAGSASKLSCPRSCSAKN 485
           RRA +A V   S+  S K NA    K SC  S   K+
Sbjct: 118 RRAKQALVEVKSSISSNKGNASKKRKTSCKESAKKKD 154


>SB_14155| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 495

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = +3

Query: 375 RRALEAAVRPTSTPMSAKWNAGSASKLSCPRSCSAKN 485
           RRA +A V   S+  S K NA    K SC  S   K+
Sbjct: 118 RRAKQALVEVKSSISSNKGNASKKRKTSCKESAKKKD 154


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,537,475
Number of Sequences: 59808
Number of extensions: 387663
Number of successful extensions: 1613
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1483
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1607
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1215643300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)