Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1196
(538 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g23460.1 68414.m02939 polygalacturonase, putative / pectinase... 32 0.21
At5g09790.1 68418.m01133 PHD finger family protein / SET domain-... 29 1.5
At1g23080.2 68414.m02886 auxin efflux carrier protein, putative ... 29 1.5
At1g23080.1 68414.m02885 auxin efflux carrier protein, putative ... 29 1.5
At4g16190.1 68417.m02457 cysteine proteinase, putative contains ... 29 2.6
At4g38560.1 68417.m05459 expressed protein 28 4.5
At2g40935.1 68415.m05053 expressed protein low similarity to PGP... 28 4.5
At1g42740.1 68414.m04939 hypothetical protein 28 4.5
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 27 6.0
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 27 6.0
At5g22090.1 68418.m02572 expressed protein 27 6.0
At3g54190.1 68416.m05990 expressed protein GTP-binding regulator... 27 6.0
At3g19510.1 68416.m02472 homeobox protein (HAT 3.1) identical to... 27 6.0
At3g01460.1 68416.m00070 PHD finger family protein / methyl-CpG ... 27 6.0
At1g05910.1 68414.m00620 cell division cycle protein 48-related ... 27 6.0
At3g20920.1 68416.m02644 translocation protein-related contains ... 27 7.9
At3g14860.2 68416.m01879 NHL repeat-containing protein contains ... 27 7.9
At3g14860.1 68416.m01878 NHL repeat-containing protein contains ... 27 7.9
>At1g23460.1 68414.m02939 polygalacturonase, putative / pectinase,
putative similar to polygalacturonase GB:BAA88472
GI:6624205 from (Cucumis sativus); contains Pfam profile
PF00295: Glycosyl hydrolases family 28
(polygalacturonases)
Length = 459
Score = 32.3 bits (70), Expect = 0.21
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +3
Query: 213 PGHLLDRA*LLKDSATGLLTQVLLDKSIDSSCRNG 317
PGH + L KD+ TG++TQV+LD ++ NG
Sbjct: 282 PGHGISIGSLGKDNTTGIVTQVVLDTALLRETTNG 316
>At5g09790.1 68418.m01133 PHD finger family protein / SET
domain-containing protein contains Pfam domain, PF00628:
PHD-finger and PF00856: SET domain
Length = 352
Score = 29.5 bits (63), Expect = 1.5
Identities = 19/62 (30%), Positives = 28/62 (45%)
Frame = +2
Query: 326 TQRRSRTAPGPCPPRRKTSA*SSRPADIDADVREMERRKRVEALMSSKLFREELERVPST 505
T S A PC RR+T A + RP+ R+M+ + A + +EE E S
Sbjct: 3 TWNASSPAASPCSSRRRTKAPARRPSSESPPPRKMKSMAEIMAKSVPVVEQEEEEDEDSY 62
Query: 506 SD 511
S+
Sbjct: 63 SN 64
>At1g23080.2 68414.m02886 auxin efflux carrier protein, putative
similar to efflux carrier of polar auxin transport
[Brassica juncea] gi|12331173|emb|CAC24691
Length = 527
Score = 29.5 bits (63), Expect = 1.5
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = +1
Query: 352 GPLSTEEEDERLKQ-PSGRHRRRCPRNGTPEARRSSHVLEAVP 477
G EEE ER+K+ P+G H+ RC + + E VP
Sbjct: 402 GDYGGEEESERVKEVPNGLHKLRCNSTAELNPKEAIETGETVP 444
>At1g23080.1 68414.m02885 auxin efflux carrier protein, putative
similar to efflux carrier of polar auxin transport
[Brassica juncea] gi|12331173|emb|CAC24691
Length = 619
Score = 29.5 bits (63), Expect = 1.5
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = +1
Query: 352 GPLSTEEEDERLKQ-PSGRHRRRCPRNGTPEARRSSHVLEAVP 477
G EEE ER+K+ P+G H+ RC + + E VP
Sbjct: 406 GDYGGEEESERVKEVPNGLHKLRCNSTAELNPKEAIETGETVP 448
>At4g16190.1 68417.m02457 cysteine proteinase, putative contains
similarity to papain-like cysteine proteinase isoform I
GI:7381219 from [Ipomoea batatas]
Length = 373
Score = 28.7 bits (61), Expect = 2.6
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = +3
Query: 402 PTSTPMSAKWNAGSASKLSCPRSCSAKNWNGSLLPAMHEGGDAPL 536
P + ++A W +SCP CS +G LL G AP+
Sbjct: 278 PLAIAINAMWMQTYIGGVSCPYVCSKSQDHGVLLVGFGSSGYAPI 322
>At4g38560.1 68417.m05459 expressed protein
Length = 521
Score = 27.9 bits (59), Expect = 4.5
Identities = 28/92 (30%), Positives = 41/92 (44%), Gaps = 1/92 (1%)
Frame = +1
Query: 265 Y*PRSCLTNQ*TRAVGMAETDSETIPNGTGPLSTEEEDERLKQPSGRHRRRCPRNGTPEA 444
Y + C +++ G A E +P+ T + D R ++ R R + PR+ TPE
Sbjct: 123 YCKKDCFSSRIDHREGEAPILDE-MPSKTRLKTPLSPDTRPRKSEHRTRNQGPRSKTPEP 181
Query: 445 RRSSHVLEAVPRRI-GTGPFYQRCTRAATLRS 537
R S LE RI T P R +A L+S
Sbjct: 182 RGS--YLEPPRSRIPQTQPVPHRSLESAGLKS 211
>At2g40935.1 68415.m05053 expressed protein low similarity to
PGPS/D12 [Petunia x hybrida] GI:4105794; contains Pfam
profile PF04749: Protein of unknown function, DUF614
Length = 190
Score = 27.9 bits (59), Expect = 4.5
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 5/40 (12%)
Frame = +2
Query: 137 LSACYDRRSNLCVNFVCSDHLICRYA-----GPSAGPCMT 241
+ AC+D + CV C ++ + A G AGPC+T
Sbjct: 51 ICACFDDMQSCCVGLFCPCYIFGKNAELLGSGTFAGPCLT 90
>At1g42740.1 68414.m04939 hypothetical protein
Length = 359
Score = 27.9 bits (59), Expect = 4.5
Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = -1
Query: 475 EQLRGHESFDALPAFHFADIGVDVGRTAASSARLPPRWTGARCRSGSS-LSPSQP 314
+ G S +P H D+ GR+ A +A +PP W RC S L PS P
Sbjct: 304 DDCEGKRSIPPIPKCHPTDVPHFHGRSQALNAPIPP-WM-MRCSSKKHLLPPSDP 356
>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 27.5 bits (58), Expect = 6.0
Identities = 26/71 (36%), Positives = 31/71 (43%)
Frame = +2
Query: 323 RTQRRSRTAPGPCPPRRKTSA*SSRPADIDADVREMERRKRVEALMSSKLFREELERVPS 502
R+ RRSR+ P PRR S R D D RE + RKR + + RE E
Sbjct: 125 RSPRRSRSPPRRRSPRRSRSP-RRRSRD---DYREKDYRKRSRSRSYDR--RERHEEKDR 178
Query: 503 TSDARGRRRSA 535
R R RSA
Sbjct: 179 DHRRRTRSRSA 189
>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 27.5 bits (58), Expect = 6.0
Identities = 26/71 (36%), Positives = 31/71 (43%)
Frame = +2
Query: 323 RTQRRSRTAPGPCPPRRKTSA*SSRPADIDADVREMERRKRVEALMSSKLFREELERVPS 502
R+ RRSR+ P PRR S R D D RE + RKR + + RE E
Sbjct: 125 RSPRRSRSPPRRRSPRRSRSP-RRRSRD---DYREKDYRKRSRSRSYDR--RERHEEKDR 178
Query: 503 TSDARGRRRSA 535
R R RSA
Sbjct: 179 DHRRRTRSRSA 189
>At5g22090.1 68418.m02572 expressed protein
Length = 463
Score = 27.5 bits (58), Expect = 6.0
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = -1
Query: 337 SSLSPSQPFRQLESIDLSSKTWVS 266
S+ S + R+ S DLSSKTWVS
Sbjct: 31 SNTSSAPSLRRTFSADLSSKTWVS 54
>At3g54190.1 68416.m05990 expressed protein GTP-binding regulatory
protein beta chain, Dictyostelium discoideum, PIR:A47370
Length = 467
Score = 27.5 bits (58), Expect = 6.0
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +2
Query: 332 RRSRTAPGPCPPRRKTSA*SSRPADIDADVREMERRK 442
RR +P PC RR + SRP V++++RR+
Sbjct: 4 RRITASPRPCSGRRIVAKKRSRPDGFVNSVKKLQRRE 40
>At3g19510.1 68416.m02472 homeobox protein (HAT 3.1) identical to
homeotic protein HAT 3.1 (GI:11994474) [Arabidopsis
thaliana]
Length = 723
Score = 27.5 bits (58), Expect = 6.0
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +2
Query: 428 MERRKRVEALMSSKLFREELERVPSTS 508
+ RR+ VE L KL+ EE + VP++S
Sbjct: 514 VSRRRNVERLDYKKLYDEEYDNVPTSS 540
>At3g01460.1 68416.m00070 PHD finger family protein / methyl-CpG
binding domain-containing protein contains Pfam profiles
PF00628: PHD-finger (2 copies), PF01429: Methyl-CpG
binding domain
Length = 2176
Score = 27.5 bits (58), Expect = 6.0
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = +1
Query: 379 ERLKQPSGRHRRRCPRNGTPEARRSS 456
ERL P R R P NG PE + SS
Sbjct: 331 ERLHTPKRRKTSRWPNNGFPEQKGSS 356
>At1g05910.1 68414.m00620 cell division cycle protein 48-related /
CDC48-related similar to SP|P54609 Cell division cycle
protein 48 homolog {Arabidopsis thaliana}; contains Pfam
profiles PF00004: ATPase AAA family, PF00439:
Bromodomain
Length = 1210
Score = 27.5 bits (58), Expect = 6.0
Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Frame = +1
Query: 361 STEEEDERLKQPSGRH-RRRCPRNGTPEARRSSHVLEAVPRRIGTGPFYQRCTRAATLR 534
S+ EDE + P+ R RRR +N + R E PRR G P +R T A R
Sbjct: 101 SSGAEDEDMMSPAYRTLRRRVHKNFSTSKSRKDMDAELAPRREGLRP--RRSTTIANKR 157
>At3g20920.1 68416.m02644 translocation protein-related contains
weak similarity to Drosophila translocation protein 1
(GI:558181) [Drosophila melanogaster]
Length = 365
Score = 27.1 bits (57), Expect = 7.9
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -1
Query: 526 SPPSCIAGRRDPFQFFAEQLRGHESFDA 443
S P A ++D FQ FAE++R H+ ++
Sbjct: 30 SQPRKQAVKKDSFQLFAEKVRDHKGLES 57
>At3g14860.2 68416.m01879 NHL repeat-containing protein contains
Pfam profile PF01436: NHL repeat
Length = 493
Score = 27.1 bits (57), Expect = 7.9
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +3
Query: 426 KWNAGSASKLSCPRSCSAKNWNGSLLPAMHEGGD 527
KW GS+SKLS + + NG L+ + EG D
Sbjct: 54 KWTTGSSSKLSQSDTNVLQFENGYLVETVVEGND 87
>At3g14860.1 68416.m01878 NHL repeat-containing protein contains
Pfam profile PF01436: NHL repeat
Length = 492
Score = 27.1 bits (57), Expect = 7.9
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +3
Query: 426 KWNAGSASKLSCPRSCSAKNWNGSLLPAMHEGGD 527
KW GS+SKLS + + NG L+ + EG D
Sbjct: 54 KWTTGSSSKLSQSDTNVLQFENGYLVETVVEGND 87
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,910,156
Number of Sequences: 28952
Number of extensions: 256227
Number of successful extensions: 964
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 936
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 964
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 993966856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -