Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1189
         (463 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g74640.1 68414.m08644 expressed protein contains Pfam profile...    32   0.22 
At3g25240.1 68416.m03153 hypothetical protein contains Pfam prof...    28   3.5  
At4g24490.1 68417.m03510 geranylgeranyl transferase alpha subuni...    27   4.7  
At1g40087.1 68414.m04742 hypothetical protein                          27   6.2  
At5g62790.1 68418.m07882 1-deoxy-D-xylulose 5-phosphate reductoi...    27   8.2  

>At1g74640.1 68414.m08644 expressed protein contains Pfam profile:
           PF00561 alpha/beta hydrolase fold
          Length = 370

 Score = 31.9 bits (69), Expect = 0.22
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = -3

Query: 419 LVGGRPTLRLPVRGRHSRIFLPHRPSSLRAMWAGPLPLQFTNSTGYVS 276
           ++GG     L +R     +  P   +++   WAGPLP+ F   +  VS
Sbjct: 168 IIGGGHAATLALRATQRGLLKPSAIAAVAPTWAGPLPIVFGRDSSMVS 215


>At3g25240.1 68416.m03153 hypothetical protein contains Pfam profile
           PF04720: Protein of unknown function (DUF506)
          Length = 281

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +3

Query: 288 RRISELKWQWAGPHSTKRGRSMGQK 362
           RR S L+ +W GP+  K G S+G K
Sbjct: 230 RRSSYLQHKWFGPYKRKVGSSLGVK 254


>At4g24490.1 68417.m03510 geranylgeranyl transferase alpha
           subunit-related / RAB geranylgeranyltransferase alpha
           subunit-related low similarity to SP|Q08602 [Rattus
           norvegicus]
          Length = 683

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +3

Query: 351 MGQKDPGVATTYWQAQC 401
           +G+++PG+ T YW A C
Sbjct: 623 VGKQNPGLVTKYWDAYC 639


>At1g40087.1 68414.m04742 hypothetical protein
          Length = 359

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -3

Query: 374 HSRIFLPHRPSSLRAMWAGPLPLQFTNSTGYVSNLTTRQ 258
           +S++F P RP  +R +  GP P +        SN T RQ
Sbjct: 248 YSQVFGPERPGRVRCVGRGPTPSRLVRH----SNATRRQ 282


>At5g62790.1 68418.m07882 1-deoxy-D-xylulose 5-phosphate
           reductoisomerase (DXR) nearly identical to
           1-deoxy-d-xylulose-5-phosphate reductoisomerase
           [Arabidopsis thaliana] GI:4886307; contains Pfam profile
           PF02670: 1-deoxy-D-xylulose 5-phosphate reductoisomerase
          Length = 477

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = -3

Query: 347 PSSLRAMWAGPLPLQFTNSTGYVSNLT 267
           P + R  W GP P+    STG +   T
Sbjct: 70  PEAPRQSWDGPKPISIVGSTGSIGTQT 96


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,454,143
Number of Sequences: 28952
Number of extensions: 171753
Number of successful extensions: 415
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 407
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 415
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 772134480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)