Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1186
         (639 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26644| Best HMM Match : Collagen (HMM E-Value=0)                    28   5.6  
SB_33220| Best HMM Match : TP2 (HMM E-Value=1.7)                       28   5.6  
SB_10378| Best HMM Match : TSGP1 (HMM E-Value=2)                       28   7.4  
SB_8396| Best HMM Match : Spb1_C (HMM E-Value=0.65)                    28   7.4  
SB_57582| Best HMM Match : efhand (HMM E-Value=3.8e-05)                27   9.7  
SB_42301| Best HMM Match : Keratin_B2 (HMM E-Value=1.2)                27   9.7  

>SB_26644| Best HMM Match : Collagen (HMM E-Value=0)
          Length = 877

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 12/24 (50%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
 Frame = -1

Query: 579 PRGRYGLPPLDGKKG-RLITFTVG 511
           P+G+ G+P  DG+KG R+  FT+G
Sbjct: 423 PKGQNGIPGRDGRKGERVEVFTLG 446


>SB_33220| Best HMM Match : TP2 (HMM E-Value=1.7)
          Length = 590

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -3

Query: 238 PYWSFRKKTVFSVLLLHNHSNHRHQPS 158
           P+WS     +    L+++HS+H H P+
Sbjct: 440 PHWSIITHIIIITPLVNHHSHHHHHPT 466



 Score = 27.9 bits (59), Expect = 7.4
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -3

Query: 238 PYWSFRKKTVFSVLLLHNHSNHRHQPS 158
           P+WS     +    L+++HS H H P+
Sbjct: 502 PHWSIITHIIIITTLVNHHSYHHHHPT 528



 Score = 27.9 bits (59), Expect = 7.4
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -3

Query: 238 PYWSFRKKTVFSVLLLHNHSNHRHQPS 158
           P+WS     +    L+++H +HRH P+
Sbjct: 539 PHWSVITHIIIITPLVNHHPHHRHHPT 565


>SB_10378| Best HMM Match : TSGP1 (HMM E-Value=2)
          Length = 114

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +3

Query: 231 QYGTTS*TEPVEREKFKPTRPQTVNKPRKTKRP 329
           QYG     E  ++ K KP +P+   KPRK K+P
Sbjct: 54  QYGKWRPYESKKKPK-KPRKPKKPKKPRKPKKP 85


>SB_8396| Best HMM Match : Spb1_C (HMM E-Value=0.65)
          Length = 1007

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
 Frame = +3

Query: 258 PVER--EKFKPTRPQTVNKPRKTKRPXXXXXXXXXXPTGKSQRLSNSREKERPRSKL 422
           PVER  E+  PT   +   P KTK P           +GK ++++ +  K+    KL
Sbjct: 253 PVERLVERMTPTLMSSSTSPVKTKSPNVTVSTKPASSSGKKEKVAVAVRKKSTSRKL 309


>SB_57582| Best HMM Match : efhand (HMM E-Value=3.8e-05)
          Length = 520

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +3

Query: 225 KDQYGTTS*TEPVEREKFKPTRPQTVNKPRKTKRP 329
           K++  TT  +E + +    P RP++ N+P   +RP
Sbjct: 275 KEEPETTQSSEQLPKRPSSPQRPKSPNRPASPQRP 309



 Score = 27.5 bits (58), Expect = 9.7
 Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
 Frame = +1

Query: 202 PRRPSSSGKTSTVQRPR-PNQLKERNSNLPDLKL---*TSQERRKDQKNMMTIIITNLLG 369
           P+RP S  + S+ QRPR PN+    + +   + L    +S  R   Q + +++  +N   
Sbjct: 306 PQRPRSPNRPSSPQRPRSPNRPASTSQSPSSIMLDRPDSSPARPASQMSGVSLSRSNSSP 365

Query: 370 NLRDYPILE 396
           +L D P +E
Sbjct: 366 SLLDLPAIE 374


>SB_42301| Best HMM Match : Keratin_B2 (HMM E-Value=1.2)
          Length = 600

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +1

Query: 208 RPSSSGKTSTVQRPRPNQLKERNSNLP 288
           + +SSG TST +  RPN+ K++N   P
Sbjct: 145 KDTSSGTTSTERPERPNRPKKKNKPKP 171


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,554,195
Number of Sequences: 59808
Number of extensions: 319218
Number of successful extensions: 758
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 683
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 751
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1608851125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)