Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1186
         (639 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g20110.1 68414.m02516 zinc finger (FYVE type) family protein ...    33   0.21 
At2g39300.1 68415.m04825 expressed protein ; expression supporte...    27   7.9  

>At1g20110.1 68414.m02516 zinc finger (FYVE type) family protein
           contains Pfam profile: PF01363 FYVE zinc finger
          Length = 601

 Score = 32.7 bits (71), Expect = 0.21
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = +1

Query: 7   PTAPEGQALVKPNGHGLFSQPRAPPKIKRPVPLSEKGKYE 126
           P +P   +L  PN +  F+QP  PP I  P PLS  G ++
Sbjct: 95  PPSPPATSL-NPNSYSTFNQPPPPPTI-HPQPLSSYGSFD 132


>At2g39300.1 68415.m04825 expressed protein ; expression supported
           by MPSS
          Length = 768

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +1

Query: 61  SQPRAPPKIKRPVPLSEKGK 120
           S+ R PP+ + P PLSE GK
Sbjct: 134 SRRRLPPRAQSPSPLSESGK 153


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,284,938
Number of Sequences: 28952
Number of extensions: 228624
Number of successful extensions: 603
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 583
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 601
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1314848736
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)