Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1183
(577 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g20340.1 68417.m02969 transcription initiation factor IIE (TF... 30 1.3
At2g41210.1 68415.m05089 phosphatidylinositol-4-phosphate 5-kina... 30 1.3
At2g43900.1 68415.m05457 endonuclease/exonuclease/phosphatase fa... 29 2.2
At4g36750.1 68417.m05214 quinone reductase family protein simila... 29 2.9
At3g61180.1 68416.m06847 zinc finger (C3HC4-type RING finger) fa... 29 2.9
At3g28790.1 68416.m03593 expressed protein 29 2.9
At2g24700.1 68415.m02951 transcriptional factor B3 family protei... 29 2.9
At5g08050.1 68418.m00938 expressed protein predicted protein, Ar... 28 3.9
At4g11680.1 68417.m01866 zinc finger (C3HC4-type RING finger) fa... 28 3.9
At3g09710.1 68416.m01150 calmodulin-binding family protein low s... 28 3.9
At1g53165.1 68414.m06023 protein kinase, putative similar to ser... 28 5.1
At1g19270.1 68414.m02397 ubiquitin interaction motif-containing ... 28 5.1
At1g63170.1 68414.m07139 zinc finger (C3HC4-type RING finger) fa... 27 6.8
At1g44110.1 68414.m05095 cyclin, putative similar to mitotic cyc... 27 6.8
At1g12760.1 68414.m01481 zinc finger (C3HC4-type RING finger) fa... 27 6.8
At3g59740.1 68416.m06665 receptor lectin kinase 3 (lecRK3) ident... 27 9.0
At3g49500.1 68416.m05410 RNA-dependent RNA polymerase (SDE1) ide... 27 9.0
At1g29300.1 68414.m03582 expressed protein contains Pfam profile... 27 9.0
>At4g20340.1 68417.m02969 transcription initiation factor IIE
(TFIIE) alpha subunit family protein / general
transcription factor TFIIE family protein contains Pfam
profile: PF02002 TFIIE alpha subunit
Length = 527
Score = 29.9 bits (64), Expect = 1.3
Identities = 16/49 (32%), Positives = 28/49 (57%)
Frame = +3
Query: 387 ENETPTSDNDNQSLKNTKSTQTPKVKTSDTATQMETMKTKNVRKA*KRD 533
+N TP SDN +S+KN K + V D T+ + ++ +++ K KR+
Sbjct: 30 DNYTPESDNQQKSVKNVKGS---AVIVLDALTRRQWVREEDLAKEVKRN 75
>At2g41210.1 68415.m05089 phosphatidylinositol-4-phosphate 5-kinase
family protein similar to
phosphatidylinositol-4-phosphate 5-kinase AtPIP5K1
[Arabidopsis thaliana] GI:3702691; contains Pfam
profiles PF01504: Phosphatidylinositol-4-phosphate
5-Kinase, PF02493: MORN repeat
Length = 772
Score = 29.9 bits (64), Expect = 1.3
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +3
Query: 309 EKNVRTTSINASSQNNVF-ELNIPHSSENETPTSDNDNQSLKNTKSTQ 449
E VR T N+VF +++ ++N+T T DND+++ N S +
Sbjct: 13 EVTVRKTQQAKKRANSVFGTVSVAPHTDNDTTTDDNDDETTTNRSSLE 60
>At2g43900.1 68415.m05457 endonuclease/exonuclease/phosphatase family
protein belongs to Pfam:PF03372:
Endonuclease/Exonuclease/phosphatase family; contains 3
WD-40 repeats (PF00400);similar to Type II
inositol-1,4,5-trisphosphate 5-phosphatase EC 3.1.3.56
(5PTASE) (INPP5B) (SP:P32019) [Homo sapiens]
Length = 1305
Score = 29.1 bits (62), Expect = 2.2
Identities = 16/57 (28%), Positives = 27/57 (47%)
Frame = +3
Query: 300 CLKEKNVRTTSINASSQNNVFELNIPHSSENETPTSDNDNQSLKNTKSTQTPKVKTS 470
C KN+R S ++S++ + N S+ + SD D+ S + KS K+S
Sbjct: 1093 CFSAKNLRIDSNPSNSKSQSLKKNEGDSNSKSSKKSDGDSNSKSSKKSDGDSNSKSS 1149
>At4g36750.1 68417.m05214 quinone reductase family protein similar
to 1,4-benzoquinone reductase [Phanerochaete
chrysosporium][GI:4454993]; similar to Trp repressor
binding protein [Escherichia coli][SP|P30849]; contains
flavodoxin domain PF00258
Length = 273
Score = 28.7 bits (61), Expect = 2.9
Identities = 15/55 (27%), Positives = 24/55 (43%)
Frame = +3
Query: 306 KEKNVRTTSINASSQNNVFELNIPHSSENETPTSDNDNQSLKNTKSTQTPKVKTS 470
K+K TT ++ N P +++ T D D + NT T TP + T+
Sbjct: 11 KKKKPATTGDGPGIDDDNDATNAPIQIDDDQTTIDGDRTTATNTGGTTTPAITTT 65
>At3g61180.1 68416.m06847 zinc finger (C3HC4-type RING finger)
family protein low similarity to RNF6 protein [Mus
musculus] GI:20530241; contains Pfam profile PF00097:
Zinc finger, C3HC4 type (RING finger)
Length = 379
Score = 28.7 bits (61), Expect = 2.9
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = -1
Query: 520 AFLTFFVFIVSICVAVSLVFTLGVC 446
AFL F V V ICVAV+ + + VC
Sbjct: 226 AFLAFDVMFVVICVAVASLIGIAVC 250
>At3g28790.1 68416.m03593 expressed protein
Length = 608
Score = 28.7 bits (61), Expect = 2.9
Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Frame = +3
Query: 321 RTTSINASSQNNVFELNIP-HSSENETPTSDNDNQSLKNTKSTQT-PKVKTSDTATQMET 494
R SI+ SS ++N SS +S +DN+S NTKS T K + TA +ET
Sbjct: 174 RGKSIDESSYGLDVDVNASIGSSSGSDGSSSSDNESSSNTKSQGTSSKSGSESTAGSIET 233
>At2g24700.1 68415.m02951 transcriptional factor B3 family protein
low similarity to reproductive meristem gene 1 from
[Brassica oleracea var. botrytis] GI:3170424,
[Arabidopsis thaliana] GI:13604227; contains Pfam
profile PF02362: B3 DNA binding domain
Length = 555
Score = 28.7 bits (61), Expect = 2.9
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +3
Query: 297 QCLKEKNVRTTSINASSQNNVFELNIPHSSENETP 401
Q +K++ V T N++SQN L + HSS+ P
Sbjct: 444 QTIKQEYVSTEEKNSTSQNRFVTLTLTHSSKLNLP 478
>At5g08050.1 68418.m00938 expressed protein predicted protein,
Arabidopsis thaliana
Length = 158
Score = 28.3 bits (60), Expect = 3.9
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +3
Query: 378 HSSENETPTSDNDNQSLKNTKSTQTPKVKTSDTATQMETM 497
HS N+ P+ +++ + KST TP+VK Q++ +
Sbjct: 13 HSMANKKPSPSAATRTITSKKSTATPQVKLLTRVEQLKLL 52
>At4g11680.1 68417.m01866 zinc finger (C3HC4-type RING finger)
family protein low similarity to SP|Q9WTV7 RING finger
protein 12 (LIM domain interacting RING finger protein)
{Mus musculus}; contains Pfam profile PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 390
Score = 28.3 bits (60), Expect = 3.9
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = -1
Query: 517 FLTFFVFIVSICVAVSLVFTLGVC 446
FL F VF V CVA++ V L VC
Sbjct: 246 FLGFDVFFVVFCVALACVIGLAVC 269
>At3g09710.1 68416.m01150 calmodulin-binding family protein low
similarity to SF16 protein [Helianthus annuus]
GI:560150; contains Pfam profile PF00612: IQ
calmodulin-binding motif
Length = 454
Score = 28.3 bits (60), Expect = 3.9
Identities = 12/35 (34%), Positives = 23/35 (65%)
Frame = +3
Query: 381 SSENETPTSDNDNQSLKNTKSTQTPKVKTSDTATQ 485
SSE E T++NDN S+KN+ + + +T+ ++ +
Sbjct: 274 SSEKEQNTTNNDNSSVKNSTNRNSQGGETAKSSNR 308
>At1g53165.1 68414.m06023 protein kinase, putative similar to
serine/threonine protein kinase 24 [Homo sapiens]
SWISS-PROT:Q9Y6E0
Length = 1007
Score = 27.9 bits (59), Expect = 5.1
Identities = 9/28 (32%), Positives = 19/28 (67%)
Frame = +2
Query: 140 WKNSLQVLIYSHRKCNYWKAYEFL*NDD 223
WK L+ ++++ R+C+ + ++ L NDD
Sbjct: 262 WKRILKAVVFACRECHAMEPHQILVNDD 289
>At1g19270.1 68414.m02397 ubiquitin interaction motif-containing
protein / LIM domain-containing protein weak similarity
to LIM-homeobox protein [Mus musculus] GI:2149584, Hic-5
[Mus musculus] GI:664955; contains Pfam profiles
PF02809: Ubiquitin interaction motif, PF00412: LIM
domain
Length = 532
Score = 27.9 bits (59), Expect = 5.1
Identities = 15/62 (24%), Positives = 26/62 (41%)
Frame = +3
Query: 306 KEKNVRTTSINASSQNNVFELNIPHSSENETPTSDNDNQSLKNTKSTQTPKVKTSDTATQ 485
K N R N +NV+ N P +S ++ P++ + + TQ P +T+
Sbjct: 9 KGSNQRLRVGNNKHNHNVYYDNYPTASHDDEPSAADTDADNDEPHHTQEPSTSEDNTSND 68
Query: 486 ME 491
E
Sbjct: 69 QE 70
>At1g63170.1 68414.m07139 zinc finger (C3HC4-type RING finger)
family protein low similarity to SP|Q06003 Goliath
protein (G1 protein) {Drosophila melanogaster}; contains
Pfam profile PF00097: Zinc finger, C3HC4 type (RING
finger)
Length = 381
Score = 27.5 bits (58), Expect = 6.8
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -1
Query: 517 FLTFFVFIVSICVAVSLVFTLGVC 446
FL F VF V CVA++ V + VC
Sbjct: 226 FLGFDVFFVVFCVALACVIGIAVC 249
>At1g44110.1 68414.m05095 cyclin, putative similar to mitotic cyclin
a2-type [Glycine max] GI:857397, cyclin A-like protein
[Nicotiana tabacum] GI:1064927; contains Pfam profiles
PF00134: Cyclin, N-terminal domain, PF02984: Cyclin,
C-terminal domain
Length = 460
Score = 27.5 bits (58), Expect = 6.8
Identities = 13/47 (27%), Positives = 25/47 (53%)
Frame = +3
Query: 306 KEKNVRTTSINASSQNNVFELNIPHSSENETPTSDNDNQSLKNTKST 446
K K + +NAS +N+ + +PH + SD+ + S+ T+S+
Sbjct: 72 KLKIAPSVCVNASFSSNLQQSIVPHKVASSPSKSDDGSVSMDETRSS 118
>At1g12760.1 68414.m01481 zinc finger (C3HC4-type RING finger)
family protein low similarity to SP|Q9NVW2 RING finger
protein 12 (LIM domain interacting RING finger protein)
{Homo sapiens}; contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 368
Score = 27.5 bits (58), Expect = 6.8
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -1
Query: 517 FLTFFVFIVSICVAVSLVFTLGVC 446
FL F VF V CVA++ V + VC
Sbjct: 216 FLGFDVFFVVFCVALACVIGIAVC 239
>At3g59740.1 68416.m06665 receptor lectin kinase 3 (lecRK3)
identical to receptor lectin kinase 3 [Arabidopsis
thaliana] gi|4100060|gb|AAD00733
Length = 659
Score = 27.1 bits (57), Expect = 9.0
Identities = 12/45 (26%), Positives = 22/45 (48%)
Frame = -3
Query: 248 LMINSIICGRRFREIRKLSNNCIFDDCKLELEDCSSIIPSCPKLV 114
L++ ++CGRR E R N + D LEL + + + + +
Sbjct: 526 LVMLEVVCGRRLIERRAAENEAVLVDWILELWESGKLFDAAEESI 570
>At3g49500.1 68416.m05410 RNA-dependent RNA polymerase (SDE1)
identical to RNA-dependent RNA polymerase [Arabidopsis
thaliana] gi|8248473|gb|AAF74208
Length = 1196
Score = 27.1 bits (57), Expect = 9.0
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = +3
Query: 456 KVKTSDTATQMETMKTKNVRKA*KRDGIC 542
K + SD T M K KNV K R G+C
Sbjct: 527 KTRVSDIKTWMGKFKDKNVAKCAARMGLC 555
>At1g29300.1 68414.m03582 expressed protein contains Pfam profile
PF04859: Plant protein of unknown function (DUF641
Length = 459
Score = 27.1 bits (57), Expect = 9.0
Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = +3
Query: 315 NVRTTSINASSQNNVFELNIPHSSENETPTSDNDNQ--SLKNTKSTQTPKVKTSD 473
N+RTTS SS N + + + N D+ + LK+T S+++ ++K +
Sbjct: 25 NLRTTSTKVSSNNGIGICMLKSQNPNFDDEDDDGDSVFDLKSTSSSRSGEIKVRE 79
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,875,063
Number of Sequences: 28952
Number of extensions: 231998
Number of successful extensions: 797
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 797
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1121903184
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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