Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1181
         (611 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          27   0.094
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    25   0.66 
EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate 1-deca...    23   2.7  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    23   2.7  
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    22   3.5  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    22   4.7  

>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 27.5 bits (58), Expect = 0.094
 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
 Frame = -3

Query: 402 STPYGSVDRSSPPSLPSNRCGSRNRS--TTSLAPPLYTGSASKRTARR 265
           S  Y S++ ++PP  P  R  S   +  T S  PPLY    +KR   R
Sbjct: 720 SISYLSMENNAPPPPPPPRVESFAETVRTVSKIPPLYKDLVAKRCEER 767


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 24.6 bits (51), Expect = 0.66
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = -3

Query: 360 LPSNRCGSRNRSTTSLAPPLYTGSASKRTARRCLQRPRP 244
           LP++RC SR  S+ SL  P      S  + R  L R  P
Sbjct: 79  LPNSRCNSR-ESSDSLVQPRCPSGESMLSERAALLRGVP 116


>EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate
           1-decarboxylase protein.
          Length = 540

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +2

Query: 380 STDPYGVLPLWRSNDLN 430
           + DPYG++  W ++ LN
Sbjct: 141 AVDPYGLVAQWATDALN 157


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +3

Query: 522 WRTSPYGCPRPTS 560
           W+ SP G P P+S
Sbjct: 67  WKKSPQGAPSPSS 79


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -3

Query: 363 SLPSNRCGSRNRSTTSLAPPLYTGSASKRTARRCLQR 253
           SL S    + N+S+TS  PP +  S SK     C  R
Sbjct: 56  SLLSPSGNTPNKSSTSPYPPNHPLSGSKHLCSICGDR 92


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 11/30 (36%), Positives = 13/30 (43%)
 Frame = -2

Query: 304 IVHRKCF*THRASLPPAPAAGCSIQACNLR 215
           +VH KC     A   PAPA   +  A   R
Sbjct: 262 LVHHKCGGEEEAERAPAPAVRAAGDAAAAR 291


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,436
Number of Sequences: 336
Number of extensions: 3409
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15561709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)