Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1181
(611 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 158 3e-39
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 157 7e-39
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 157 7e-39
SB_56| Best HMM Match : Actin (HMM E-Value=0) 157 7e-39
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 157 9e-39
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 155 3e-38
SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07) 138 4e-33
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) 52 5e-07
SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10) 49 3e-06
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 5e-04
SB_22343| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.015
SB_54| Best HMM Match : Actin (HMM E-Value=0) 37 0.015
SB_9926| Best HMM Match : DPPIV_N (HMM E-Value=0) 31 0.74
SB_8479| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_41148| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_38918| Best HMM Match : DUF997 (HMM E-Value=2.3) 28 6.9
SB_59515| Best HMM Match : Pox_A_type_inc (HMM E-Value=3.2e-31) 27 9.1
SB_44791| Best HMM Match : 7tm_1 (HMM E-Value=0) 27 9.1
SB_5589| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 158 bits (384), Expect = 3e-39
Identities = 72/75 (96%), Positives = 75/75 (100%)
Frame = -2
Query: 508 GGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQ 329
GGTTMYPG+ADRMQKEI+ALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQ
Sbjct: 275 GGTTMYPGLADRMQKEISALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQ 334
Query: 328 EYDESGPSIVHRKCF 284
EYDESGP+IVHRKCF
Sbjct: 335 EYDESGPAIVHRKCF 349
Score = 62.1 bits (144), Expect = 3e-10
Identities = 30/34 (88%), Positives = 32/34 (94%)
Frame = -3
Query: 609 GMESLAGIHETTYNSIMKWDVDIRKDLYANTVLS 508
GMES +GIHETTYNSIMK DVDIRKDLYANTV+S
Sbjct: 242 GMES-SGIHETTYNSIMKCDVDIRKDLYANTVMS 274
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 157 bits (381), Expect = 7e-39
Identities = 72/75 (96%), Positives = 74/75 (98%)
Frame = -2
Query: 508 GGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQ 329
GGTTMYPGIADRMQKEI+ALAP TMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQ
Sbjct: 264 GGTTMYPGIADRMQKEISALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQ 323
Query: 328 EYDESGPSIVHRKCF 284
EYDESGP+IVHRKCF
Sbjct: 324 EYDESGPAIVHRKCF 338
Score = 64.1 bits (149), Expect = 9e-11
Identities = 32/34 (94%), Positives = 32/34 (94%)
Frame = -3
Query: 609 GMESLAGIHETTYNSIMKWDVDIRKDLYANTVLS 508
GMES AGIHETTYNSIMK DVDIRKDLYANTVLS
Sbjct: 231 GMES-AGIHETTYNSIMKCDVDIRKDLYANTVLS 263
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 157 bits (381), Expect = 7e-39
Identities = 72/75 (96%), Positives = 74/75 (98%)
Frame = -2
Query: 508 GGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQ 329
GG+TMYPGIADRMQKEIT+LAP TMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQ
Sbjct: 302 GGSTMYPGIADRMQKEITSLAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQ 361
Query: 328 EYDESGPSIVHRKCF 284
EYDESGPSIVHRKCF
Sbjct: 362 EYDESGPSIVHRKCF 376
Score = 64.1 bits (149), Expect = 9e-11
Identities = 32/34 (94%), Positives = 32/34 (94%)
Frame = -3
Query: 609 GMESLAGIHETTYNSIMKWDVDIRKDLYANTVLS 508
GMES AGIHETTYNSIMK DVDIRKDLYANTVLS
Sbjct: 269 GMES-AGIHETTYNSIMKCDVDIRKDLYANTVLS 301
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 157 bits (381), Expect = 7e-39
Identities = 72/75 (96%), Positives = 74/75 (98%)
Frame = -2
Query: 508 GGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQ 329
GG+TMYPGIADRMQKEIT+LAP TMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQ
Sbjct: 301 GGSTMYPGIADRMQKEITSLAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQ 360
Query: 328 EYDESGPSIVHRKCF 284
EYDESGPSIVHRKCF
Sbjct: 361 EYDESGPSIVHRKCF 375
Score = 64.1 bits (149), Expect = 9e-11
Identities = 32/34 (94%), Positives = 32/34 (94%)
Frame = -3
Query: 609 GMESLAGIHETTYNSIMKWDVDIRKDLYANTVLS 508
GMES AGIHETTYNSIMK DVDIRKDLYANTVLS
Sbjct: 268 GMES-AGIHETTYNSIMKCDVDIRKDLYANTVLS 300
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 157 bits (380), Expect = 9e-39
Identities = 72/75 (96%), Positives = 74/75 (98%)
Frame = -2
Query: 508 GGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQ 329
GG+TMYPGIADRMQKEI+ALAP TMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQ
Sbjct: 302 GGSTMYPGIADRMQKEISALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQ 361
Query: 328 EYDESGPSIVHRKCF 284
EYDESGPSIVHRKCF
Sbjct: 362 EYDESGPSIVHRKCF 376
Score = 64.1 bits (149), Expect = 9e-11
Identities = 32/34 (94%), Positives = 32/34 (94%)
Frame = -3
Query: 609 GMESLAGIHETTYNSIMKWDVDIRKDLYANTVLS 508
GMES AGIHETTYNSIMK DVDIRKDLYANTVLS
Sbjct: 269 GMES-AGIHETTYNSIMKCDVDIRKDLYANTVLS 301
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 155 bits (376), Expect = 3e-38
Identities = 71/75 (94%), Positives = 74/75 (98%)
Frame = -2
Query: 508 GGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQ 329
GG+TM+PGIADRMQKEI+ALAP TMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQ
Sbjct: 301 GGSTMFPGIADRMQKEISALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQ 360
Query: 328 EYDESGPSIVHRKCF 284
EYDESGPSIVHRKCF
Sbjct: 361 EYDESGPSIVHRKCF 375
Score = 64.1 bits (149), Expect = 9e-11
Identities = 32/34 (94%), Positives = 32/34 (94%)
Frame = -3
Query: 609 GMESLAGIHETTYNSIMKWDVDIRKDLYANTVLS 508
GMES AGIHETTYNSIMK DVDIRKDLYANTVLS
Sbjct: 268 GMES-AGIHETTYNSIMKCDVDIRKDLYANTVLS 300
>SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07)
Length = 149
Score = 138 bits (333), Expect = 4e-33
Identities = 61/75 (81%), Positives = 69/75 (92%)
Frame = -2
Query: 508 GGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQ 329
GG+TM+PGIADRMQKEI LA ++MK+K+IAPPERKYSVWIGGSILASLSTFQQMWI+K+
Sbjct: 75 GGSTMFPGIADRMQKEIAMLANASMKVKVIAPPERKYSVWIGGSILASLSTFQQMWIAKE 134
Query: 328 EYDESGPSIVHRKCF 284
EY E GP IVHRKCF
Sbjct: 135 EYHEYGPPIVHRKCF 149
Score = 50.8 bits (116), Expect = 9e-07
Identities = 25/34 (73%), Positives = 27/34 (79%)
Frame = -3
Query: 609 GMESLAGIHETTYNSIMKWDVDIRKDLYANTVLS 508
GME+ GIHE YN IMK DVDIRKDLY+N VLS
Sbjct: 42 GMEA-PGIHEAIYNCIMKCDVDIRKDLYSNCVLS 74
>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
Length = 240
Score = 51.6 bits (118), Expect = 5e-07
Identities = 23/61 (37%), Positives = 39/61 (63%), Gaps = 3/61 (4%)
Frame = -2
Query: 535 GLVRQHRIVGGTTMYPGIADRMQKEITALAPSTMKIKIIA---PPERKYSVWIGGSILAS 365
GL + GG T+ G +R+ +E+ + P +M++K+I+ E++++ WIGGSILAS
Sbjct: 170 GLFNSVIVTGGNTLLQGFVERLNRELVSKTPPSMRLKLISNNSSVEKRFNPWIGGSILAS 229
Query: 364 L 362
L
Sbjct: 230 L 230
>SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10)
Length = 543
Score = 49.2 bits (112), Expect = 3e-06
Identities = 23/60 (38%), Positives = 36/60 (60%)
Frame = -2
Query: 451 LAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF*THR 272
+ P ++ ++I+ ++Y+VW GGS+LAS F + +K +YDE GPSI F HR
Sbjct: 285 IKPKPIETQVISHHMQRYAVWFGGSMLASTPEFYSVCHTKADYDEHGPSICRHNPF-LHR 343
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 41.5 bits (93), Expect = 5e-04
Identities = 17/42 (40%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Frame = -2
Query: 433 KIKIIAPPERKYSVWIGGSILAS-LSTFQQMWISKQEYDESG 311
KI+I PP RK+ V++GG++LA + W++++EY+E G
Sbjct: 358 KIRIEDPPRRKHMVFMGGAVLADIMKDKDSFWMTRKEYEEKG 399
Score = 27.9 bits (59), Expect = 6.9
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -3
Query: 591 GIHETTYNSIMKWDVDIRKDLYANTVLS 508
G+ E +N+I D+D R + Y + VLS
Sbjct: 277 GVAELLFNTIQAADIDTRSEFYKHIVLS 304
>SB_22343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 245
Score = 36.7 bits (81), Expect = 0.015
Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 9/75 (12%)
Frame = -2
Query: 514 IVGGTTMYPGIADRMQKEITALAPS--------TMKIKIIAPP-ERKYSVWIGGSILASL 362
++GGT M PG R+ +EI L S +K+ PP + W+GG+I SL
Sbjct: 83 LIGGTAMTPGFKHRLMQEIYLLLQSPKYKDKLFIKTVKMHQPPVNANITAWLGGAIFGSL 142
Query: 361 STFQQMWISKQEYDE 317
+++ Y +
Sbjct: 143 EVLADRSTTRERYQQ 157
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 36.7 bits (81), Expect = 0.015
Identities = 15/28 (53%), Positives = 21/28 (75%)
Frame = -3
Query: 591 GIHETTYNSIMKWDVDIRKDLYANTVLS 508
GIHE+ + SI K D+D+R +L+ N VLS
Sbjct: 2318 GIHESIFKSIKKCDIDLRAELFHNIVLS 2345
>SB_9926| Best HMM Match : DPPIV_N (HMM E-Value=0)
Length = 1066
Score = 31.1 bits (67), Expect = 0.74
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = -3
Query: 357 PSNRCGSRNRSTTSLAPPLYTGSASKRTARRCLQRPRPAAQ 235
P N+ G++ R +L P++TGS + R RP P+A+
Sbjct: 879 PGNQAGNKTRPLRALRSPIHTGSTLEVDRTRQGTRPDPSAR 919
>SB_8479| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 548
Score = 29.5 bits (63), Expect = 2.2
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Frame = -3
Query: 390 GSVDRSSPPSLPSNRCGSRNRS----TTSLAPPLYTGSASKRTARRCLQR 253
GS+ SP S P +R GSR R+ T+S A + +T ++C R
Sbjct: 338 GSIAPPSPTSTPRSRTGSRTRTPPTPTSSRASSRGSARGGAKTTKKCTTR 387
>SB_41148| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 583
Score = 29.1 bits (62), Expect = 3.0
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = -3
Query: 330 RSTTSLAPPLYTGSASKRTARRCLQRPRPAAQFRL 226
++T P++T S K+T R C++ P P + R+
Sbjct: 18 KNTLRFIMPVFTRSGRKKTNRTCIEDPTPQTERRV 52
>SB_38918| Best HMM Match : DUF997 (HMM E-Value=2.3)
Length = 860
Score = 27.9 bits (59), Expect = 6.9
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = -3
Query: 579 TTYNSIMKWDVDIRKDLYANTVLSVVPPC 493
T+Y +++ WD+ + D+ + TV +V P C
Sbjct: 576 TSYFTVLHWDLPLFLDMASKTVSAVKPLC 604
>SB_59515| Best HMM Match : Pox_A_type_inc (HMM E-Value=3.2e-31)
Length = 2122
Score = 27.5 bits (58), Expect = 9.1
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = -3
Query: 606 MESLAGIHETTYNSIMKWDVDIRKDLYAN 520
+E G ET Y + KW+VD+R+++ A+
Sbjct: 1683 VEENFGELETKYKKMEKWNVDLREEVIAH 1711
>SB_44791| Best HMM Match : 7tm_1 (HMM E-Value=0)
Length = 415
Score = 27.5 bits (58), Expect = 9.1
Identities = 12/31 (38%), Positives = 21/31 (67%)
Frame = +2
Query: 518 VLAYKSLRMSTSHFMMELYVVSWMPARLSIP 610
+L+Y+ LR T++F++ L V + A LS+P
Sbjct: 51 ILSYRRLRTVTNYFIISLAVSDLLVAGLSMP 81
>SB_5589| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 583
Score = 27.5 bits (58), Expect = 9.1
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = -3
Query: 402 STPYGSVDRSSPPSLPSNRCGSRNRSTTSLAPPLYTGSAS 283
STP +V PP PSN + ++ S +P T S S
Sbjct: 217 STPQATVQTPPPPPEPSNEPSTSSKPKASPSPSSITTSTS 256
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,009,061
Number of Sequences: 59808
Number of extensions: 451157
Number of successful extensions: 1274
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1272
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1499981500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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