Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1179
         (237 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g06010.1 68416.m00686 homeotic gene regulator, putative simil...    28   0.76 
At3g01660.1 68416.m00097 expressed protein similar to putative p...    27   1.3  
At2g05360.1 68415.m00564 hypothetical protein                          26   3.1  
At1g69523.1 68414.m07991 UbiE/COQ5 methyltransferase family prot...    26   3.1  
At5g54400.1 68418.m06775 expressed protein                             26   4.0  
At2g16070.2 68415.m01843 expressed protein                             26   4.0  
At2g16070.1 68415.m01842 expressed protein                             26   4.0  
At5g17100.1 68418.m02003 hypothetical protein                          25   9.3  
At4g18670.1 68417.m02762 leucine-rich repeat family protein / ex...    25   9.3  
At2g41740.1 68415.m05159 villin 2 (VLN2) nearly identical to vil...    25   9.3  
At2g25660.1 68415.m03075 expressed protein                             25   9.3  
At1g79480.1 68414.m09263 hypothetical protein low similarity to ...    25   9.3  
At1g63640.2 68414.m07198 kinesin motor protein-related C-termina...    25   9.3  
At1g02390.1 68414.m00185 phospholipid/glycerol acyltransferase f...    25   9.3  

>At3g06010.1 68416.m00686 homeotic gene regulator, putative similar
           to SP|P25439 Homeotic gene regulator (Brahma protein)
           {Drosophila melanogaster}; contains Pfam profiles
           PF00271: Helicase conserved C-terminal domain, PF00176:
           SNF2 family N-terminal domain
          Length = 1132

 Score = 28.3 bits (60), Expect = 0.76
 Identities = 10/12 (83%), Positives = 10/12 (83%)
 Frame = -3

Query: 172 PYLQSGGDYNMW 137
           PYL  GGDYNMW
Sbjct: 722 PYLFVGGDYNMW 733


>At3g01660.1 68416.m00097 expressed protein similar to putative
           protein GB:CAB45319 [Arabidopsis thaliana]
          Length = 273

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -1

Query: 120 VLEEAYRVLKPGGIRAAEF 64
           V  E YRVLKPGG+    F
Sbjct: 173 VFAEVYRVLKPGGVLIVSF 191


>At2g05360.1 68415.m00564 hypothetical protein
          Length = 358

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +3

Query: 117 KPKTKIYHIL*SPPLC 164
           KP TK YHI+ +P LC
Sbjct: 121 KPTTKQYHIIPTPKLC 136


>At1g69523.1 68414.m07991 UbiE/COQ5 methyltransferase family protein
           low similarity to SP|Q05197 Phosphatidylethanolamine
           N-methyltransferase (EC 2.1.1.17) [Rhodopseudomonas
           sphaeroides] {Rhodobacter sphaeroides}; contains Pfam
           profile PF01209: methlytransferase, UbiE/COQ5 family
          Length = 300

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 11/28 (39%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = -1

Query: 159 VGVIIICGIF-LF*VLEEAYRVLKPGGI 79
           VG +++C +  +   L+E  R+L+PGGI
Sbjct: 198 VGTLVLCSVTDVTQTLKEIKRILRPGGI 225


>At5g54400.1 68418.m06775 expressed protein
          Length = 292

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 11/14 (78%), Positives = 12/14 (85%)
 Frame = -1

Query: 120 VLEEAYRVLKPGGI 79
           VL EA RVLKPGG+
Sbjct: 218 VLGEAVRVLKPGGV 231


>At2g16070.2 68415.m01843 expressed protein
          Length = 307

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = -2

Query: 83  GSAPPNSCSPGDPLVLERPPAR 18
           G   PN C PG  LV+E   AR
Sbjct: 261 GKRTPNQCPPGKVLVIEDGEAR 282


>At2g16070.1 68415.m01842 expressed protein
          Length = 224

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = -2

Query: 83  GSAPPNSCSPGDPLVLERPPAR 18
           G   PN C PG  LV+E   AR
Sbjct: 178 GKRTPNQCPPGKVLVIEDGEAR 199


>At5g17100.1 68418.m02003 hypothetical protein
          Length = 239

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +3

Query: 84  RPALALCMPPLKPKTKIY 137
           RP   LC P  KP T+IY
Sbjct: 197 RPVPVLCRPSPKPGTEIY 214


>At4g18670.1 68417.m02762 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 839

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 83  GSAPPNSCSPGDPLVLERPPARG 15
           G +PP+S SP  P V+  PP  G
Sbjct: 588 GPSPPSSPSPPLPPVIPSPPIVG 610


>At2g41740.1 68415.m05159 villin 2 (VLN2) nearly identical to villin
           2 (VLN2) [Arabidopsis thaliana] GI:3415115
          Length = 976

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -3

Query: 181 ELTPYLQSGGDYNMWYI 131
           ++ P L+SGG   +WY+
Sbjct: 381 DIPPLLESGGKLEVWYV 397


>At2g25660.1 68415.m03075 expressed protein 
          Length = 2146

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -3

Query: 169 YLQSGGDYNMWYIFVLGFRGGIQS 98
           Y+Q GG+ NMW   V    GG+ S
Sbjct: 652 YVQLGGNCNMWRSDVTSEDGGLLS 675


>At1g79480.1 68414.m09263 hypothetical protein low similarity to
           beta-1,3-glucanase-like protein GI:9758115 from
           [Arabidopsis thaliana]
          Length = 356

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -2

Query: 74  PPNSCSPGDPLVLERPPARG 15
           PP S SP  P ++  PP  G
Sbjct: 194 PPESSSPNPPEIVPSPPESG 213


>At1g63640.2 68414.m07198 kinesin motor protein-related C-terminal
            region is similar to C-term region of kinesin motor
            protein GB:AAB51397 (Mus musculus); contains Pfam
            profile: PF00225 Kinesin motor domain
          Length = 1065

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 15/50 (30%), Positives = 21/50 (42%)
 Frame = +2

Query: 14   FPAPAAALELVDPPGCRNSAARIPPGFSTLYASSKT*NKNIPHIIITPTL 163
            FP  A  LEL++ P  R ++ ++           K    NIP  I   TL
Sbjct: 973  FPETAKPLELIERPEARMTSEKLEKSVKMGKTEPKDSRTNIPSKIPKQTL 1022


>At1g02390.1 68414.m00185 phospholipid/glycerol acyltransferase
           family protein contains Pfam profile PF01553:
           Acyltransferase
          Length = 530

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -1

Query: 168 TYRVGVIIICGIFLF*VLEEAYRVLKPGGIRAA 70
           ++RVG  ++   FL  V  E ++VLK GG R A
Sbjct: 118 SFRVGKSVLPKYFLEDVGLEMFQVLKRGGKRVA 150


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,533,639
Number of Sequences: 28952
Number of extensions: 84270
Number of successful extensions: 243
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 243
length of database: 12,070,560
effective HSP length: 57
effective length of database: 10,420,296
effective search space used: 218826216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)