Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1178
         (538 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25798| Best HMM Match : FA_desaturase (HMM E-Value=0)               46   2e-05
SB_53556| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.34 
SB_606| Best HMM Match : HMG_box (HMM E-Value=0.19)                    28   4.2  
SB_57887| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.6  
SB_42121| Best HMM Match : EGF_CA (HMM E-Value=8.7)                    28   5.6  
SB_12735| Best HMM Match : PT (HMM E-Value=0.36)                       28   5.6  
SB_34320| Best HMM Match : Ponericin (HMM E-Value=1.2)                 27   7.3  
SB_30489| Best HMM Match : HEAT (HMM E-Value=9.2e-17)                  27   7.3  
SB_8366| Best HMM Match : Ponericin (HMM E-Value=2.9)                  27   7.3  
SB_2784| Best HMM Match : UCR_14kD (HMM E-Value=1.5)                   27   7.3  
SB_32862| Best HMM Match : CaM_binding (HMM E-Value=1.4)               27   7.3  
SB_20028| Best HMM Match : Ponericin (HMM E-Value=2.9)                 27   7.3  
SB_2167| Best HMM Match : Ponericin (HMM E-Value=3.2)                  27   7.3  
SB_47834| Best HMM Match : Ank (HMM E-Value=9.8e-09)                   27   9.7  

>SB_25798| Best HMM Match : FA_desaturase (HMM E-Value=0)
          Length = 268

 Score = 46.0 bits (104), Expect = 2e-05
 Identities = 22/43 (51%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
 Frame = -3

Query: 536 AHLWGYKPY---VNT*EQLITKLWRCCALGEGWHNYHHVFPWD 417
           AH+WG KPY   +N  E L   L      GEG+HNYHH FP D
Sbjct: 172 AHMWGDKPYDVTINPAENLFVTL---ATSGEGYHNYHHTFPQD 211



 Score = 37.5 bits (83), Expect = 0.007
 Identities = 22/50 (44%), Positives = 28/50 (56%)
 Frame = -1

Query: 427 FPGTTNAAELGDYSTNLSPALIDIAAKFGLAYDLKTVSEKMIRNRINRTG 278
           FP    A+E G    N+S  LID+ A  GL  D K V ++ IR R+ RTG
Sbjct: 208 FPQDYAASEFGT-RLNMSTRLIDMWAAMGLVSDRKVVPKETIRKRMMRTG 256


>SB_53556| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1524

 Score = 31.9 bits (69), Expect = 0.34
 Identities = 23/69 (33%), Positives = 35/69 (50%)
 Frame = -3

Query: 350 KIRLSLRFEDGI*KDDKESH*SNRRRYPSLGEQKAELEEDHHHLENPIWGWGDKDMSDDD 171
           KI+L    EDG   ++K    S R R   L  +  ELE++ + LE  +    +K   DDD
Sbjct: 400 KIKLERFSEDGTELEEKIR--SQRNRITELERRVKELEKEKNLLEQQVKTMKNKS-DDDD 456

Query: 170 KKLAEIVHK 144
           KK+ ++  K
Sbjct: 457 KKIKDLNEK 465


>SB_606| Best HMM Match : HMG_box (HMM E-Value=0.19)
          Length = 159

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
 Frame = -3

Query: 284 NRRRYPSLGEQKAELEEDHHHL---ENPIWGWGDKDMSDDD 171
           NRR+  S GE++ +L+E+ H L   E  +    D D  DDD
Sbjct: 79  NRRKEESFGEEEIKLQENTHFLAAKEGGLRTLCDDDDDDDD 119


>SB_57887| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 542

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = -2

Query: 504 YIGATDNKTVAMLCFRRGLAQLSSRISLGQQMRPSSET 391
           ++   DNKT+ ML      A  S+ IS GQ+ RP  +T
Sbjct: 261 FLSNADNKTITMLRRYLSEAGCSTLISGGQRRRPYRQT 298


>SB_42121| Best HMM Match : EGF_CA (HMM E-Value=8.7)
          Length = 202

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 18/50 (36%), Positives = 24/50 (48%)
 Frame = -1

Query: 448 GTTIITYFPGTTNAAELGDYSTNLSPALIDIAAKFGLAYDLKTVSEKMIR 299
           G   + Y      A+E G    N+S  LID+ A  GL  D K V ++ IR
Sbjct: 67  GREPLRYLGNDYAASEFGT-RLNMSTRLIDMWAAMGLVSDRKVVPKETIR 115


>SB_12735| Best HMM Match : PT (HMM E-Value=0.36)
          Length = 1148

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
 Frame = -3

Query: 269 PSLGEQKAELE-EDHHHLENPIWGWGDKDMSDDDKKLAEIVHKK 141
           P L +Q  E++ ++   L+  +WG  D D  D+DK+++  VH+K
Sbjct: 388 PDLDKQMGEVDGQEDETLDEKMWG--DSDDDDEDKEVS--VHQK 427


>SB_34320| Best HMM Match : Ponericin (HMM E-Value=1.2)
          Length = 303

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -1

Query: 208 YGAGAIKTCQTMIRNWRKLFTKRMTRYKQL 119
           YGAG +K  +T + N  +   KRMT Y  L
Sbjct: 47  YGAGVVKWTKTELENIDRKTRKRMTIYGML 76


>SB_30489| Best HMM Match : HEAT (HMM E-Value=9.2e-17)
          Length = 722

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = -1

Query: 424 PGTTNAAELGDYSTNLSPALIDIAAKFGLAYDLKTVSEKMIRNRINRTG 278
           P T++++ +G      SP+   +AA+  +A   K+ S+    +R N TG
Sbjct: 530 PSTSSSSSIGGTVRKNSPSASSLAARVSIANAAKSNSKNTKPDRSNSTG 578


>SB_8366| Best HMM Match : Ponericin (HMM E-Value=2.9)
          Length = 307

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -1

Query: 208 YGAGAIKTCQTMIRNWRKLFTKRMTRYKQL 119
           YGAG +K  +T + N  +   KRMT Y  L
Sbjct: 13  YGAGVVKWTKTELENIDRKTRKRMTIYGML 42


>SB_2784| Best HMM Match : UCR_14kD (HMM E-Value=1.5)
          Length = 413

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -1

Query: 208 YGAGAIKTCQTMIRNWRKLFTKRMTRYKQL 119
           YGAG +K  +T + N  +   KRMT Y  L
Sbjct: 218 YGAGVVKWTKTELENIDRKTRKRMTIYGML 247


>SB_32862| Best HMM Match : CaM_binding (HMM E-Value=1.4)
          Length = 202

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -1

Query: 208 YGAGAIKTCQTMIRNWRKLFTKRMTRYKQL 119
           YGAG +K  +T + N  +   KRMT Y  L
Sbjct: 13  YGAGVVKWTKTELENIDRKTRKRMTIYGML 42


>SB_20028| Best HMM Match : Ponericin (HMM E-Value=2.9)
          Length = 279

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -1

Query: 208 YGAGAIKTCQTMIRNWRKLFTKRMTRYKQL 119
           YGAG +K  +T + N  +   KRMT Y  L
Sbjct: 13  YGAGVVKWTKTELENIDRKTRKRMTIYGML 42


>SB_2167| Best HMM Match : Ponericin (HMM E-Value=3.2)
          Length = 298

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -1

Query: 208 YGAGAIKTCQTMIRNWRKLFTKRMTRYKQL 119
           YGAG +K  +T + N  +   KRMT Y  L
Sbjct: 14  YGAGVVKWTKTELENIDRKTRKRMTIYGML 43


>SB_47834| Best HMM Match : Ank (HMM E-Value=9.8e-09)
          Length = 288

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 14/51 (27%), Positives = 21/51 (41%)
 Frame = +2

Query: 56  KESEINSFNINLHKMCTSETLELLISSHSFCEQFPPISYHRLTCLYRPSPI 208
           K S  +    NLH +      E  I  +S    +  + Y RL CL  P+ +
Sbjct: 137 KNSPDHKITYNLHYLQGMPNYEKCIPKNSLKPLYAMVKYKRLKCLQHPTSL 187


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,825,169
Number of Sequences: 59808
Number of extensions: 359374
Number of successful extensions: 841
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 840
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1215643300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)