Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1178
(538 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g15870.1 68416.m02007 fatty acid desaturase family protein si... 37 0.007
At3g15850.1 68416.m02005 fatty acid desaturase family protein si... 37 0.007
At1g79460.1 68414.m09261 ent-kaurene synthase / ent-kaurene synt... 33 0.16
At1g06350.1 68414.m00671 fatty acid desaturase family protein si... 32 0.21
At5g14620.1 68418.m01714 cytosine methyltransferase (DRM2) ident... 31 0.64
At1g06120.1 68414.m00641 fatty acid desaturase family protein si... 31 0.64
At1g06090.1 68414.m00638 fatty acid desaturase family protein si... 31 0.64
At2g29605.1 68415.m03595 hypothetical protein 30 1.1
At1g06360.1 68414.m00672 fatty acid desaturase family protein si... 30 1.1
At2g31360.1 68415.m03831 delta 9 desaturase (ADS2) identical to ... 29 1.5
At4g13500.1 68417.m02106 expressed protein 29 2.0
At2g11623.1 68415.m01250 hypothetical protein 29 2.0
At2g05310.1 68415.m00559 expressed protein 29 2.0
At1g06080.1 68414.m00637 delta 9 desaturase (ADS1) identical to ... 29 2.0
At2g28540.1 68415.m03467 expressed protein 28 3.4
At5g55490.1 68418.m06911 expressed protein 27 6.0
At1g79560.1 68414.m09275 FtsH protease, putative contains simila... 27 6.0
At1g06100.1 68414.m00639 fatty acid desaturase family protein si... 27 6.0
At3g18730.1 68416.m02378 tetratricopeptide repeat (TPR)-containi... 27 7.9
At1g34070.1 68414.m04224 hypothetical protein 27 7.9
>At3g15870.1 68416.m02007 fatty acid desaturase family protein
similar to delta 9 acyl-lipid desaturase (ADS1)
GI:2970034 from [Arabidopsis thaliana]
Length = 292
Score = 37.1 bits (82), Expect = 0.007
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = -3
Query: 533 HLWGYKPYVNT*EQLITKLW-RCCALGEGWHNYHHVFPWDNKCG 405
H+WG + + NT + W LGEGWHN HH F + + G
Sbjct: 211 HIWGTRAW-NTSDFSKNNWWVAILTLGEGWHNNHHAFEFSARHG 253
>At3g15850.1 68416.m02005 fatty acid desaturase family protein
similar to delta 9 acyl-lipid desaturase (ADS1)
GI:2970034 from [Arabidopsis thaliana]
Length = 371
Score = 37.1 bits (82), Expect = 0.007
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = -3
Query: 533 HLWGYKPYVNT*EQLITKLW-RCCALGEGWHNYHHVFPWDNKCG 405
H+WG + + NT + W A GEGWHN HH F + + G
Sbjct: 288 HVWGKQAW-NTGDLSKNNWWVAALAFGEGWHNNHHAFEFSARHG 330
>At1g79460.1 68414.m09261 ent-kaurene synthase / ent-kaurene
synthetase B (KS) (GA2) identical to GI:3056725
[PMID:9536043]; formerly called ent-kaurene synthetase B
Length = 785
Score = 32.7 bits (71), Expect = 0.16
Identities = 14/52 (26%), Positives = 26/52 (50%)
Frame = +2
Query: 26 RNRRLNLTV*KESEINSFNINLHKMCTSETLELLISSHSFCEQFPPISYHRL 181
R + LN + + + + + LH +CTS+ L+L + +FC+ RL
Sbjct: 427 RRKILNGSAVENTRVTKTSYRLHNICTSDILKLAVDDFNFCQSIHREEMERL 478
>At1g06350.1 68414.m00671 fatty acid desaturase family protein
similar to delta 9 acyl-lipid desaturase (ADS1)
GI:2970034 from [Arabidopsis thaliana]
Length = 300
Score = 32.3 bits (70), Expect = 0.21
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = -3
Query: 533 HLWGYKPYVNT*EQLITKLWRCC-ALGEGWHNYHHVF 426
H+WG + + NT + W +GE WHN HH F
Sbjct: 218 HIWGSRSW-NTKDTSRNVWWLSLFTMGESWHNNHHAF 253
>At5g14620.1 68418.m01714 cytosine methyltransferase (DRM2)
identical to cytosine methyltransferase GI:7658293 from
[Arabidopsis thaliana]
Length = 626
Score = 30.7 bits (66), Expect = 0.64
Identities = 12/39 (30%), Positives = 24/39 (61%)
Frame = -3
Query: 311 KDDKESH*SNRRRYPSLGEQKAELEEDHHHLENPIWGWG 195
++ K H +RR+ S GE ++ ++++ L NP+ G+G
Sbjct: 248 EEQKPRHNIKKRRFESKGEPRSSVDDEPIRLPNPMIGFG 286
>At1g06120.1 68414.m00641 fatty acid desaturase family protein
similar to delta 9 acyl-lipid desaturase GB:BAA25180
GI:2970034 (ADS1) from [Arabidopsis thaliana]; supported
by cDNA:gi_12083275_gb_AF332434.1_AF332434
Length = 299
Score = 30.7 bits (66), Expect = 0.64
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = -3
Query: 533 HLWGYKPYVNT*EQLITKLWRC-CALGEGWHNYHHVF 426
H+WG + + NT + W +GE WHN HH F
Sbjct: 217 HIWGSRAW-NTKDTSRNIWWLGPFTMGESWHNNHHAF 252
>At1g06090.1 68414.m00638 fatty acid desaturase family protein
similar to delta 9 acyl-lipid desaturase GB:BAA25180
GI:2970034 (ADS1) from [Arabidopsis thaliana]
Length = 299
Score = 30.7 bits (66), Expect = 0.64
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = -3
Query: 533 HLWGYKPYVNT*EQLITKLWRC-CALGEGWHNYHHVF 426
H+WG + + NT + W +GE WHN HH F
Sbjct: 217 HIWGSRAW-NTKDTSRNIWWLGPFTMGESWHNNHHAF 252
>At2g29605.1 68415.m03595 hypothetical protein
Length = 401
Score = 29.9 bits (64), Expect = 1.1
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Frame = -3
Query: 278 RRYPSLGEQKAELEEDH---HHLENPIWGWGDKDMSD 177
R+Y SL E ++E+H HHL PIW K+ +D
Sbjct: 34 RKYMSLEETVNYMQENHKISHHLTKPIWEQLQKENAD 70
>At1g06360.1 68414.m00672 fatty acid desaturase family protein
similar to delta 9 acyl-lipid desaturase (ADS1)
GI:2970034 from [Arabidopsis thaliana]
Length = 299
Score = 29.9 bits (64), Expect = 1.1
Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = -3
Query: 533 HLWGYKPYVNT*EQLITKLWRCC-ALGEGWHNYHHVF 426
H+WG + + T + W +GE WHN HH F
Sbjct: 217 HIWGSRSW-KTKDTSRNVWWLSLFTMGESWHNNHHAF 252
>At2g31360.1 68415.m03831 delta 9 desaturase (ADS2) identical to
delta 9 acyl-lipid desaturase (ADS2) GI:2970036 from
[Arabidopsis thaliana]
Length = 307
Score = 29.5 bits (63), Expect = 1.5
Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = -3
Query: 533 HLWGYKPYVNT*EQLITKLWRCC-ALGEGWHNYHHVF 426
H+WG + + T + W + GE WHN HH F
Sbjct: 225 HIWGTRTW-KTNDTSRNVWWLSVFSFGESWHNNHHAF 260
>At4g13500.1 68417.m02106 expressed protein
Length = 125
Score = 29.1 bits (62), Expect = 2.0
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +3
Query: 198 PAPYRV-F*MMMIFLQLCLLFAQGWVPSPVR 287
P PY + F M F+ L + FA GW+ P+R
Sbjct: 95 PLPYIIIFGMSTPFVILAIAFANGWIKVPIR 125
>At2g11623.1 68415.m01250 hypothetical protein
Length = 110
Score = 29.1 bits (62), Expect = 2.0
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Frame = -3
Query: 275 RYPSLGEQKAELEEDH---HHLENPIWGWGDKDMSDDDKK 165
+Y SL E + +E++H HHL PIW K+ + KK
Sbjct: 56 KYMSLEETETYVEDNHKISHHLTKPIWEQLQKESPEFFKK 95
>At2g05310.1 68415.m00559 expressed protein
Length = 125
Score = 29.1 bits (62), Expect = 2.0
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +3
Query: 198 PAPYRV-F*MMMIFLQLCLLFAQGWVPSPVR 287
P PY + F M F+ L + FA GW+ P+R
Sbjct: 95 PLPYIIIFGMSTPFVILAIAFANGWIKVPIR 125
>At1g06080.1 68414.m00637 delta 9 desaturase (ADS1) identical to
delta 9 acyl-lipid desaturase (ADS1) GB:BAA25180
GI:2970034 from [Arabidopsis thaliana]
Length = 305
Score = 29.1 bits (62), Expect = 2.0
Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = -3
Query: 533 HLWGYKPYVNT*EQLITKLWRCC-ALGEGWHNYHHVF 426
H+WG + + T + W + GE WHN HH F
Sbjct: 223 HVWGSRTW-KTNDTSRNVWWLSVFSFGESWHNNHHAF 258
>At2g28540.1 68415.m03467 expressed protein
Length = 655
Score = 28.3 bits (60), Expect = 3.4
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -2
Query: 465 CFRRGLAQLSSRISLGQQMRPSSETTAPIYHPP 367
C+RRGL ++ +L +P+S P+ PP
Sbjct: 436 CYRRGLDYVTESSTLPSSYKPTSVPRCPVSAPP 468
>At5g55490.1 68418.m06911 expressed protein
Length = 537
Score = 27.5 bits (58), Expect = 6.0
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = -3
Query: 257 EQKAELEEDHHHLENPIW-GWGDKDMSDDDKKLAEIVHK 144
+ K EL D W W D D++DDD LA+ +K
Sbjct: 474 QSKKELSYDEDTESEVDWTSWVDTDLTDDDDNLADPDYK 512
>At1g79560.1 68414.m09275 FtsH protease, putative contains
similarity to chloroplast FtsH protease GI:5804782 from
[Nicotiana tabacum]
Length = 1008
Score = 27.5 bits (58), Expect = 6.0
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Frame = -1
Query: 379 LSPALIDIAAKFGLAYDLKTVSEKMIRNRINRTG--DGTHP-WANRRQSWR 236
LS L AAK+ + +D+K V + + + I RT +GT W ++R WR
Sbjct: 306 LSEQLNSSAAKYVVEFDMKEVEKSLREDVIGRTSETEGTRALWISKRW-WR 355
>At1g06100.1 68414.m00639 fatty acid desaturase family protein
similar to delta 9 acyl-lipid desaturase (ADS1)
GI:2970034 from [Arabidopsis thaliana]
Length = 299
Score = 27.5 bits (58), Expect = 6.0
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = -3
Query: 461 LGEGWHNYHHVF 426
+GE WHN HH F
Sbjct: 241 MGESWHNNHHAF 252
>At3g18730.1 68416.m02378 tetratricopeptide repeat (TPR)-containing
protein contains Pfam profile PF00515: TPR Domain
Length = 1311
Score = 27.1 bits (57), Expect = 7.9
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +2
Query: 407 RICCPREIRDDSCANPRLKHNIATVLLSV 493
+IC E+R+ A RL HN+ V +++
Sbjct: 192 QICDEEEVREYDAARSRLHHNLGNVFMAL 220
>At1g34070.1 68414.m04224 hypothetical protein
Length = 308
Score = 27.1 bits (57), Expect = 7.9
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = -3
Query: 533 HLWGYKPYVNT 501
H WGY PYVNT
Sbjct: 283 HPWGYPPYVNT 293
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,747,338
Number of Sequences: 28952
Number of extensions: 246101
Number of successful extensions: 630
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 630
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 993966856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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