BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ce--1177 (614 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_2049| Best HMM Match : Ribosomal_LX (HMM E-Value=0.98) 33 0.14 SB_46293| Best HMM Match : Keratin_B2 (HMM E-Value=0.00077) 31 0.74 SB_3680| Best HMM Match : Keratin_B2 (HMM E-Value=0.0024) 31 0.74 SB_57888| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7 SB_39312| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0 SB_26753| Best HMM Match : BTK (HMM E-Value=3.9) 29 4.0 SB_3180| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0 SB_10782| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.2 SB_46286| Best HMM Match : Astacin (HMM E-Value=9e-15) 28 6.9 SB_33125| Best HMM Match : Pkinase (HMM E-Value=0) 28 6.9 SB_18705| Best HMM Match : DUF718 (HMM E-Value=2.3) 27 9.1 SB_58072| Best HMM Match : Protamine_P2 (HMM E-Value=7.2) 27 9.1 >SB_2049| Best HMM Match : Ribosomal_LX (HMM E-Value=0.98) Length = 731 Score = 33.5 bits (73), Expect = 0.14 Identities = 15/36 (41%), Positives = 17/36 (47%) Frame = -3 Query: 555 HGVCGFASFLCYVSSKWSAYVVILPEQKHHCIS*NT 448 HGVCGF F+ Y I Q H CIS N+ Sbjct: 161 HGVCGFLQFIVVTHDALRVYHQIARHQPHSCISWNS 196 >SB_46293| Best HMM Match : Keratin_B2 (HMM E-Value=0.00077) Length = 677 Score = 31.1 bits (67), Expect = 0.74 Identities = 11/33 (33%), Positives = 19/33 (57%) Frame = +1 Query: 310 SQYSYNGCPTLQTETRYCFTAEVGSRWYLPART 408 S+ N C +T+ +C T+++ S WY P +T Sbjct: 185 SKTQANWCHPYKTQANWCHTSKIQSNWYHPNKT 217 Score = 27.5 bits (58), Expect = 9.1 Identities = 8/28 (28%), Positives = 15/28 (53%) Frame = +1 Query: 343 QTETRYCFTAEVGSRWYLPARTHKRSYH 426 +T+ C ++ + WY P++T YH Sbjct: 90 ETQAYLCHPTKIQANWYHPSKTQANLYH 117 Score = 27.5 bits (58), Expect = 9.1 Identities = 8/28 (28%), Positives = 15/28 (53%) Frame = +1 Query: 343 QTETRYCFTAEVGSRWYLPARTHKRSYH 426 +T+ C ++ + WY P++T YH Sbjct: 622 ETQAYLCHPTKIQANWYHPSKTQANLYH 649 >SB_3680| Best HMM Match : Keratin_B2 (HMM E-Value=0.0024) Length = 180 Score = 31.1 bits (67), Expect = 0.74 Identities = 11/33 (33%), Positives = 19/33 (57%) Frame = +1 Query: 310 SQYSYNGCPTLQTETRYCFTAEVGSRWYLPART 408 S+ N C +T+ +C T+++ S WY P +T Sbjct: 30 SKTQANWCHPYKTQANWCHTSKIQSNWYHPNKT 62 >SB_57888| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 565 Score = 29.9 bits (64), Expect = 1.7 Identities = 10/34 (29%), Positives = 16/34 (47%) Frame = +1 Query: 325 NGCPTLQTETRYCFTAEVGSRWYLPARTHKRSYH 426 N C +T+ C + + WY P++T YH Sbjct: 445 NWCHPTKTQANLCHPTKTQANWYHPSKTQANWYH 478 Score = 28.3 bits (60), Expect = 5.2 Identities = 10/34 (29%), Positives = 16/34 (47%) Frame = +1 Query: 325 NGCPTLQTETRYCFTAEVGSRWYLPARTHKRSYH 426 N C +T+ C + + WY P++T YH Sbjct: 325 NWCHPTKTQACLCHPTKTQANWYHPSKTQVNWYH 358 >SB_39312| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 144 Score = 28.7 bits (61), Expect = 4.0 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 2/30 (6%) Frame = -3 Query: 585 CGFGGSGNATHGV--CGFASFLCYVSSKWS 502 CGFGG G+ G+ C + +CY +S+ S Sbjct: 54 CGFGGRGSPVDGLDKCCYVHDMCYKASRTS 83 >SB_26753| Best HMM Match : BTK (HMM E-Value=3.9) Length = 194 Score = 28.7 bits (61), Expect = 4.0 Identities = 18/57 (31%), Positives = 30/57 (52%) Frame = -3 Query: 195 KKNFSNFDIKSHDYFTTAKLSFLEAQPQSLVLQCALFKLMKGHQIFITSIEHSVIKC 25 +KN S F + + ++F ++K +P SL CA ++ H I IT H++I C Sbjct: 70 RKNLSTFPVYTSNFFLSSKTRPCR-RPLSL---CAS-RVQPRHDITITCASHTIIAC 121 >SB_3180| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 351 Score = 28.7 bits (61), Expect = 4.0 Identities = 11/19 (57%), Positives = 14/19 (73%) Frame = +2 Query: 527 KNEAKPQTPWVALPEPPNP 583 +N A PQ P A+P+PPNP Sbjct: 269 QNPAIPQLPNPAIPQPPNP 287 >SB_10782| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 399 Score = 28.3 bits (60), Expect = 5.2 Identities = 13/43 (30%), Positives = 28/43 (65%), Gaps = 1/43 (2%) Frame = +1 Query: 127 EETQLCSCKIIMALYIEIREVFFLMLRWVD-DLTAHLVLSGYW 252 ++ +L + ++I + Y+ + F L ++ ++ DLTA ++LSG W Sbjct: 129 KKRKLVTTQVIKSFYVTKGKAFSLSVQRLEADLTADMLLSGSW 171 >SB_46286| Best HMM Match : Astacin (HMM E-Value=9e-15) Length = 244 Score = 27.9 bits (59), Expect = 6.9 Identities = 10/27 (37%), Positives = 16/27 (59%) Frame = -2 Query: 457 LKYSGNAFISGGRTSCESARVGTTGCL 377 + Y GNAF S GR + + + G + C+ Sbjct: 216 MHYQGNAFSSNGRATITAKQSGVSSCI 242 >SB_33125| Best HMM Match : Pkinase (HMM E-Value=0) Length = 937 Score = 27.9 bits (59), Expect = 6.9 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%) Frame = +2 Query: 323 TTAAP-PFKPKRVTASRLK*AAGGTYPRGLTRGPTTR 430 TT+ P P +P R T++R + A PR + GP R Sbjct: 381 TTSVPAPVRPSRTTSTRARERADRELPRRHSHGPNER 417 >SB_18705| Best HMM Match : DUF718 (HMM E-Value=2.3) Length = 650 Score = 27.5 bits (58), Expect = 9.1 Identities = 16/48 (33%), Positives = 23/48 (47%) Frame = -3 Query: 171 IKSHDYFTTAKLSFLEAQPQSLVLQCALFKLMKGHQIFITSIEHSVIK 28 +K H F K E Q + +C LF+ +K HQ+F EH V + Sbjct: 488 LKEHQVFQYLK----EHQVFQNLKECQLFQYLKEHQVFQYLKEHQVFQ 531 >SB_58072| Best HMM Match : Protamine_P2 (HMM E-Value=7.2) Length = 187 Score = 27.5 bits (58), Expect = 9.1 Identities = 14/30 (46%), Positives = 17/30 (56%) Frame = +1 Query: 340 LQTETRYCFTAEVGSRWYLPARTHKRSYHQ 429 L +ET FT +R+Y P R HKR Y Q Sbjct: 34 LPSETPSAFTLRGSNRFY-PQRLHKRFYRQ 62 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 18,678,486 Number of Sequences: 59808 Number of extensions: 378883 Number of successful extensions: 771 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 638 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 766 length of database: 16,821,457 effective HSP length: 79 effective length of database: 12,096,625 effective search space used: 1512078125 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -