Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1176
         (628 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2794| Best HMM Match : RNA_pol_Rpb5_C (HMM E-Value=7.2)             29   2.3  
SB_56314| Best HMM Match : DUF454 (HMM E-Value=4.3)                    28   7.1  

>SB_2794| Best HMM Match : RNA_pol_Rpb5_C (HMM E-Value=7.2)
          Length = 371

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 21/85 (24%), Positives = 34/85 (40%)
 Frame = +2

Query: 317 TQNMPR*TCLLISDDYFITLIYEMILLQNQSYRLACKNHT*SRYYCLAKTFSHMIGAREK 496
           T  M   TC  I D +  TL  E++  +   Y +   +HT S      K   H +     
Sbjct: 117 TPEMWEKTCTCIKDIFKSTLPQELLTWRPDMYTMNAHDHTPSHSPTQTKFSDHELRPEHD 176

Query: 497 VERPSPCGRTGHNIAAACYLIIECI 571
           +    P G +   +  A  L+I+C+
Sbjct: 177 IVPRHPDGSSAEELFTA--LLIKCV 199


>SB_56314| Best HMM Match : DUF454 (HMM E-Value=4.3)
          Length = 174

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 12/39 (30%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
 Frame = -2

Query: 201 VIIGIIAYKLYLIKN--TSHLVIRLVKVDLPPALRLSFC 91
           +++ +I    +++K   T H VI++ K   PP +R+ FC
Sbjct: 125 ILVAVILAACFIVKRVKTGHKVIKVTKTTPPPRIRI-FC 162


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,766,033
Number of Sequences: 59808
Number of extensions: 292193
Number of successful extensions: 475
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 475
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1560464625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)