Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1175
         (609 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28495| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.3  
SB_39569| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.1  
SB_9096| Best HMM Match : Acid_phosphat_A (HMM E-Value=0.18)           28   6.8  
SB_34154| Best HMM Match : UvrD-helicase (HMM E-Value=0.064)           28   6.8  
SB_21536| Best HMM Match : RVT_1 (HMM E-Value=0.0043)                  28   6.8  
SB_48179| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.0  

>SB_28495| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6753

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +3

Query: 309  FKKDVVKGYVIKEDDVKVAFVTLPKTM 389
            F KD+VKGYVI ++D +   + +  T+
Sbjct: 1148 FVKDIVKGYVISQNDSRFGIIIVSSTL 1174


>SB_39569| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 857

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 14/51 (27%), Positives = 25/51 (49%)
 Frame = +1

Query: 115 EETHNLRVFLPNFWMKLVRPHPKQLPNIVHFHCSMEMTKYDIKNYLEKFMK 267
           EE  N+   + + +  +   +  QL   +H H +     YD+ N LE++MK
Sbjct: 140 EEDRNILTAMQSCFDHISLDYAFQLSKFMHSHFTYYHQGYDLMNDLERYMK 190


>SB_9096| Best HMM Match : Acid_phosphat_A (HMM E-Value=0.18)
          Length = 417

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +3

Query: 396 KYPDLFEKSINEEEEHAKSLDESKKN 473
           KY + FE+ +  E  HAK ++++KK+
Sbjct: 238 KYAEEFEREVESEIMHAKPINQNKKS 263


>SB_34154| Best HMM Match : UvrD-helicase (HMM E-Value=0.064)
          Length = 1064

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 13/25 (52%), Positives = 18/25 (72%), Gaps = 2/25 (8%)
 Frame = +3

Query: 417 KSINEEEEHAK--SLDESKKNFIKY 485
           + +NEE+E AK  S D  KKNF+K+
Sbjct: 108 QQVNEEDEDAKDESADALKKNFLKH 132


>SB_21536| Best HMM Match : RVT_1 (HMM E-Value=0.0043)
          Length = 831

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 4/87 (4%)
 Frame = +3

Query: 249 FRKIYEVPVVDVRTKINMGKFKKDVVKGYVIKEDDVKVAFVTLPKTMTFKYPDLFEKSIN 428
           F+ ++ + +++VR  + + KF    V G    EDD    FV LP TMT K     E +  
Sbjct: 641 FKGLFILLILNVRNCLLLEKF----VDG---DEDDNDAPFVMLPPTMTSKSDKTSESNKE 693

Query: 429 E----EEEHAKSLDESKKNFIKYIDHN 497
           E    +++     D  K N  K +D +
Sbjct: 694 EDSDDDDDDDYGDDSDKSNEAKVLDRD 720


>SB_48179| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 231

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 6/65 (9%)
 Frame = -2

Query: 302 HIYFGPHIHNGYFINFSK*FLMSY-----LVISIEQ*KCTMLGS-CFGCGRTNFIQKFGK 141
           H++F   IH  Y IN S   L ++      +   ++  C +L   C+ C  ++ I +FG+
Sbjct: 12  HVHFSKRIHRRYGINSSLLVLATFQCSQRTICDSDEALCMLLRRFCYPCRYSDLIGRFGR 71

Query: 140 NTRKL 126
              +L
Sbjct: 72  PVPEL 76


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,336,554
Number of Sequences: 59808
Number of extensions: 287513
Number of successful extensions: 652
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 628
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 652
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1487884875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)