Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1175
         (609 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g37280.1 68417.m05276 MRG family protein contains Pfam domain...    33   0.11 
At4g03350.1 68417.m00457 ubiquitin family protein contains INTER...    31   0.45 
At1g10450.1 68414.m01176 paired amphipathic helix repeat-contain...    30   1.4  
At4g24930.1 68417.m03570 thylakoid lumenal 17.9 kDa protein, chl...    29   1.8  
At1g74150.1 68414.m08588 kelch repeat-containing protein low sim...    29   2.4  
At4g02970.1 68417.m00404 ubiquitin family protein contains INTER...    29   3.2  
At2g34220.1 68415.m04187 hypothetical protein contains Pfam prof...    29   3.2  
At3g05390.1 68416.m00589 expressed protein ; expression supporte...    28   4.2  
At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1 pro...    28   4.2  
At5g20440.1 68418.m02430 mob1/phocein family protein contains Pf...    27   9.7  
At3g08510.1 68416.m00988 phosphoinositide-specific phospholipase...    27   9.7  

>At4g37280.1 68417.m05276 MRG family protein contains Pfam domain
           PF05712: MRG
          Length = 320

 Score = 33.5 bits (73), Expect = 0.11
 Identities = 15/49 (30%), Positives = 29/49 (59%)
 Frame = +3

Query: 396 KYPDLFEKSINEEEEHAKSLDESKKNFIKYIDHNKSRPIYPAGFXXNRL 542
           K PDLF   +N EEE    + ++  +F+K+I  N+S  + P+ +  +++
Sbjct: 263 KLPDLFSY-VNMEEETWSRMQQTLSDFLKFIQKNQSTFLLPSAYDSDKV 310


>At4g03350.1 68417.m00457 ubiquitin family protein contains
           INTERPRO:IPR000626 ubiquitin domain
          Length = 263

 Score = 31.5 bits (68), Expect = 0.45
 Identities = 15/62 (24%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
 Frame = +3

Query: 330 GYVIKEDDVKVAFVTLPKTMTFKY-PDLFEKSINEEEEHAKSLDESKKNFIKYIDHNKSR 506
           G  +++D  K+ ++ L +++  +  PD      NE+ E +K +D+ K+ F    D ++S+
Sbjct: 47  GKALEDDLHKIDYMILFESLLLRISPDADPNQSNEQTEQSKQIDDKKQEFCGIQDSSESK 106

Query: 507 PI 512
            +
Sbjct: 107 KL 108


>At1g10450.1 68414.m01176 paired amphipathic helix repeat-containing
            protein similar to Sin3 protein [Yarrowia lipolytica]
            GI:18076824; contains Pfam profile PF02671: Paired
            amphipathic helix repeat
          Length = 1173

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +3

Query: 417  KSINEEEEHAKSLDESKKNFIKYIDHNKSRPI 512
            KS+N+EE H   L+ +KK F   +D ++  P+
Sbjct: 1074 KSVNDEENHGLFLNRNKKKFTS-LDESRGMPV 1104


>At4g24930.1 68417.m03570 thylakoid lumenal 17.9 kDa protein,
           chloroplast SP:Q9SW33;GI:17369630;PMID:11719511; similar
           to expressed protein gi:12321169 {Oryza sativa}
          Length = 225

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 15/60 (25%), Positives = 30/60 (50%)
 Frame = +3

Query: 282 VRTKINMGKFKKDVVKGYVIKEDDVKVAFVTLPKTMTFKYPDLFEKSINEEEEHAKSLDE 461
           V  ++  G F +DV++ +++K+D V    +    T  + +   F  S  +EE   K +D+
Sbjct: 155 VEAEVEGGGFSRDVME-FLVKQDVVAYRCMATKVTFVYPFTTAFGDSKGQEERLKKLIDQ 213


>At1g74150.1 68414.m08588 kelch repeat-containing protein low
           similarity to rngB protein, Dictyostelium discoideum,
           PIR:S68824; contains Pfam profile PF01344: Kelch motif
          Length = 552

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -2

Query: 167 TNFIQKFGKNTRKLWVSSLINGVPPC 90
           TN +  F   T+ +W+   INGVPPC
Sbjct: 49  TNQVHVFDAETQ-IWIRPEINGVPPC 73


>At4g02970.1 68417.m00404 ubiquitin family protein contains
           INTERPRO:IPR000626 ubiquitin domain
          Length = 270

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
 Frame = +3

Query: 330 GYVIKEDDVKVAFVTL--PKTMTFKYPDLFEKSINEEEEHAKSLDESKKNFIKYIDHNKS 503
           G  +++D  K+ ++ L   + +    PD      NE+ E +K +D+ K+ F    D ++S
Sbjct: 47  GKALEDDLHKIDYMILFESRLLLRISPDADPNQSNEQTEQSKQIDDKKQEFCGIQDSSES 106

Query: 504 RPI 512
           + I
Sbjct: 107 KKI 109


>At2g34220.1 68415.m04187 hypothetical protein contains Pfam
           profiles PF04780: Protein of unknown function (DUF629),
           PF04781: Protein of unknown function (DUF627)
          Length = 718

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = +3

Query: 339 IKEDDVKVAFVTLPKTMTFKYPDLFEKSINEEEEHAKSLD 458
           +  DDVK + +TL K++  K+P +  K +  +  + K +D
Sbjct: 627 VPNDDVKKSLLTLRKSLKEKFPLIDSKILQNKSTYEKLID 666


>At3g05390.1 68416.m00589 expressed protein ; expression supported
           by MPSS
          Length = 463

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +3

Query: 396 KYPDLFEKSINEEEEHAKSLDESKKNFIKYIDHNKSRPIYPA 521
           K  +L+EK     ++  KS D SKK   K+++    +P Y A
Sbjct: 79  KMDNLYEKLEKTVKDMEKSKDGSKKEMKKFLEDEVMKPFYYA 120


>At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1
           protein GI:1279562 from [Medicago sativa]
          Length = 557

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 26/75 (34%), Positives = 36/75 (48%)
 Frame = +3

Query: 243 KLFRKIYEVPVVDVRTKINMGKFKKDVVKGYVIKEDDVKVAFVTLPKTMTFKYPDLFEKS 422
           K  +K    P  D+ TK+++ K KKDV+   V KE  VK     +PK +          S
Sbjct: 18  KPLKKGKREPEDDIDTKVSLKKQKKDVIAA-VQKEKAVK----KVPKKVESSDD---SDS 69

Query: 423 INEEEEHAKSLDESK 467
            +EEEE AK +   K
Sbjct: 70  ESEEEEKAKKVPAKK 84


>At5g20440.1 68418.m02430 mob1/phocein family protein contains Pfam
           profile: PF03637 mob1/phocein family
          Length = 217

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = -1

Query: 276 QRVLHKFF*IIFNVIFSHFHRTMKMHDVRQL 184
           +R+L K F +  ++ +SHFH  + +++   L
Sbjct: 151 KRILRKLFRVYAHIYYSHFHEIVALNEQAHL 181


>At3g08510.1 68416.m00988 phosphoinositide-specific phospholipase C
           (PLC2) identical to phosphoinositide specific
           phospholipase C(AtPLC2) GI:857374 [Arabidopsis thaliana]
          Length = 581

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +3

Query: 402 PDLFEKSINEEEEHAKSLDESKKNFIKYIDHNKSRPIYPAG 524
           PD   +    EE+  K+ ++  K  +++  HN  R IYP G
Sbjct: 339 PDKVRRLSLSEEQLEKAAEKYAKQIVRFTQHNLLR-IYPKG 378


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,007,687
Number of Sequences: 28952
Number of extensions: 213559
Number of successful extensions: 509
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 509
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1216725696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)