Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1172
(604 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly ide... 186 1e-47
At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2) id... 186 1e-47
At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4) ne... 186 1e-47
At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5) ne... 184 3e-47
At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3) ne... 184 3e-47
At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly ide... 179 2e-45
At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly ide... 107 6e-24
At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly iden... 74 6e-14
At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) near... 74 8e-14
At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) near... 74 8e-14
At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly iden... 74 8e-14
At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly iden... 73 1e-13
At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8) ide... 73 2e-13
At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical t... 73 2e-13
At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly iden... 72 3e-13
At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly iden... 70 1e-12
At5g33320.1 68418.m03955 triose phosphate/phosphate translocator... 31 0.78
At1g37130.1 68414.m04639 nitrate reductase 2 (NR2) identical to ... 30 1.0
At3g62210.1 68416.m06989 expressed protein contains Pfam profile... 30 1.4
At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin... 29 2.4
At1g68080.1 68414.m07777 expressed protein 29 2.4
At1g73340.1 68414.m08489 cytochrome P450 family protein similar ... 29 3.1
At1g51660.1 68414.m05820 mitogen-activated protein kinase kinase... 28 4.1
At1g34360.1 68414.m04266 translation initiation factor 3 (IF-3) ... 28 4.1
At4g37480.1 68417.m05304 DNAJ heat shock N-terminal domain-conta... 28 5.5
At4g32010.1 68417.m04557 transcriptional factor B3 family protei... 28 5.5
At3g46740.1 68416.m05074 chloroplast outer envelope protein, put... 28 5.5
At3g26855.1 68416.m03360 hypothetical protein 28 5.5
At2g18760.1 68415.m02184 SNF2 domain-containing protein / helica... 27 7.2
At5g55330.1 68418.m06895 membrane bound O-acyl transferase (MBOA... 27 9.6
At3g09430.1 68416.m01120 hypothetical protein 27 9.6
At1g20350.1 68414.m02539 mitochondrial import inner membrane tra... 27 9.6
>At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 450
Score = 186 bits (453), Expect = 1e-47
Identities = 95/153 (62%), Positives = 105/153 (68%), Gaps = 2/153 (1%)
Frame = -2
Query: 573 VAEITNACFEPANQMVKCDPRQASYMACCMLYRGDVVPKNVNAAIATIKTKRTIQFVDLV 394
VAEITN+ FEPA+ M KCDPR YMACC++YRGDVVPK+VNAA+ TIKTKRTIQFVD
Sbjct: 288 VAEITNSAFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVGTIKTKRTIQFVDWC 347
Query: 393 SNRFQG--RYQLPATHRGARRRLGQGSTCXXXXXXXXXXXRSLGSP*PQFDLMYAKRAFV 220
F+ YQ P G Q + C S +FDLMYAKRAFV
Sbjct: 348 PTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRID--HKFDLMYAKRAFV 405
Query: 219 HWYVGEGMEEGEFSEAREDLAALEKDYEEVGMD 121
HWYVGEGMEEGEFSEAREDLAALEKDYEEVG +
Sbjct: 406 HWYVGEGMEEGEFSEAREDLAALEKDYEEVGAE 438
>At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2)
identical to tubulin alpha-2/alpha-4 chain SP|P29510
GB:P29510 from [Arabidopsis thaliana]
Length = 450
Score = 186 bits (453), Expect = 1e-47
Identities = 95/153 (62%), Positives = 105/153 (68%), Gaps = 2/153 (1%)
Frame = -2
Query: 573 VAEITNACFEPANQMVKCDPRQASYMACCMLYRGDVVPKNVNAAIATIKTKRTIQFVDLV 394
VAEITN+ FEPA+ M KCDPR YMACC++YRGDVVPK+VNAA+ TIKTKRTIQFVD
Sbjct: 288 VAEITNSAFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVGTIKTKRTIQFVDWC 347
Query: 393 SNRFQG--RYQLPATHRGARRRLGQGSTCXXXXXXXXXXXRSLGSP*PQFDLMYAKRAFV 220
F+ YQ P G Q + C S +FDLMYAKRAFV
Sbjct: 348 PTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRID--HKFDLMYAKRAFV 405
Query: 219 HWYVGEGMEEGEFSEAREDLAALEKDYEEVGMD 121
HWYVGEGMEEGEFSEAREDLAALEKDYEEVG +
Sbjct: 406 HWYVGEGMEEGEFSEAREDLAALEKDYEEVGAE 438
>At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4)
nearly identical to SP:P29510 Tubulin alpha-2/alpha-4
chain from [Arabidopsis thaliana]
Length = 450
Score = 186 bits (453), Expect = 1e-47
Identities = 95/153 (62%), Positives = 105/153 (68%), Gaps = 2/153 (1%)
Frame = -2
Query: 573 VAEITNACFEPANQMVKCDPRQASYMACCMLYRGDVVPKNVNAAIATIKTKRTIQFVDLV 394
VAEITN+ FEPA+ M KCDPR YMACC++YRGDVVPK+VNAA+ TIKTKRTIQFVD
Sbjct: 288 VAEITNSAFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVGTIKTKRTIQFVDWC 347
Query: 393 SNRFQG--RYQLPATHRGARRRLGQGSTCXXXXXXXXXXXRSLGSP*PQFDLMYAKRAFV 220
F+ YQ P G Q + C S +FDLMYAKRAFV
Sbjct: 348 PTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRID--HKFDLMYAKRAFV 405
Query: 219 HWYVGEGMEEGEFSEAREDLAALEKDYEEVGMD 121
HWYVGEGMEEGEFSEAREDLAALEKDYEEVG +
Sbjct: 406 HWYVGEGMEEGEFSEAREDLAALEKDYEEVGAE 438
>At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 184 bits (449), Expect = 3e-47
Identities = 94/153 (61%), Positives = 104/153 (67%), Gaps = 2/153 (1%)
Frame = -2
Query: 573 VAEITNACFEPANQMVKCDPRQASYMACCMLYRGDVVPKNVNAAIATIKTKRTIQFVDLV 394
V EITNA FEPA+ M KCDPR YMACC++YRGDVVPK+VNAA+ TIKTKRT+QFVD
Sbjct: 288 VPEITNAVFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVGTIKTKRTVQFVDWC 347
Query: 393 SNRFQG--RYQLPATHRGARRRLGQGSTCXXXXXXXXXXXRSLGSP*PQFDLMYAKRAFV 220
F+ YQ P G Q + C S +FDLMYAKRAFV
Sbjct: 348 PTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRID--HKFDLMYAKRAFV 405
Query: 219 HWYVGEGMEEGEFSEAREDLAALEKDYEEVGMD 121
HWYVGEGMEEGEFSEAREDLAALEKDYEEVG +
Sbjct: 406 HWYVGEGMEEGEFSEAREDLAALEKDYEEVGAE 438
>At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 184 bits (449), Expect = 3e-47
Identities = 94/153 (61%), Positives = 104/153 (67%), Gaps = 2/153 (1%)
Frame = -2
Query: 573 VAEITNACFEPANQMVKCDPRQASYMACCMLYRGDVVPKNVNAAIATIKTKRTIQFVDLV 394
V EITNA FEPA+ M KCDPR YMACC++YRGDVVPK+VNAA+ TIKTKRT+QFVD
Sbjct: 288 VPEITNAVFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVGTIKTKRTVQFVDWC 347
Query: 393 SNRFQG--RYQLPATHRGARRRLGQGSTCXXXXXXXXXXXRSLGSP*PQFDLMYAKRAFV 220
F+ YQ P G Q + C S +FDLMYAKRAFV
Sbjct: 348 PTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRID--HKFDLMYAKRAFV 405
Query: 219 HWYVGEGMEEGEFSEAREDLAALEKDYEEVGMD 121
HWYVGEGMEEGEFSEAREDLAALEKDYEEVG +
Sbjct: 406 HWYVGEGMEEGEFSEAREDLAALEKDYEEVGAE 438
>At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly
identical to SP|P11139 Tubulin alpha-1 chain
{Arabidopsis thaliana}
Length = 450
Score = 179 bits (435), Expect = 2e-45
Identities = 91/153 (59%), Positives = 102/153 (66%), Gaps = 2/153 (1%)
Frame = -2
Query: 579 FPVAEITNACFEPANQMVKCDPRQASYMACCMLYRGDVVPKNVNAAIATIKTKRTIQFVD 400
F V EIT + FEP+N M KCDPR YMACC++YRGDVVPK+VN A+A IK KRTIQFVD
Sbjct: 286 FSVPEITTSVFEPSNMMAKCDPRHGKYMACCLMYRGDVVPKDVNTAVAAIKAKRTIQFVD 345
Query: 399 LVSNRFQG--RYQLPATHRGARRRLGQGSTCXXXXXXXXXXXRSLGSP*PQFDLMYAKRA 226
F+ YQ P+ G Q + C S +FDLMY+KRA
Sbjct: 346 WCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNNTAVAEVFSRID--HKFDLMYSKRA 403
Query: 225 FVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG 127
FVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG
Sbjct: 404 FVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG 436
>At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 427
Score = 107 bits (257), Expect = 6e-24
Identities = 52/89 (58%), Positives = 60/89 (67%), Gaps = 2/89 (2%)
Frame = -2
Query: 573 VAEITNACFEPANQMVKCDPRQASYMACCMLYRGDVVPKNVNAAIATIKTKRTIQFVDLV 394
VAEITN+ FEPA+ M KCDPR YMACC++YRGDVVPK+VNAA+ TIKTKRTIQFVD
Sbjct: 288 VAEITNSAFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVGTIKTKRTIQFVDWC 347
Query: 393 SNRFQG--RYQLPATHRGARRRLGQGSTC 313
F+ YQ P G Q + C
Sbjct: 348 PTGFKCGINYQPPTVVPGGDLAKVQRAVC 376
Score = 87.8 bits (208), Expect = 5e-18
Identities = 36/41 (87%), Positives = 40/41 (97%)
Frame = -3
Query: 398 WCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAE 276
WCPTGFK GINYQPPTVVPGGDLAKVQRAVCM+SN+T++AE
Sbjct: 346 WCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAE 386
>At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly
identical to SP|P12411 Tubulin beta-1 chain {Arabidopsis
thaliana}
Length = 447
Score = 74.1 bits (174), Expect = 6e-14
Identities = 43/151 (28%), Positives = 71/151 (47%), Gaps = 1/151 (0%)
Frame = -2
Query: 582 SFPVAEITNACFEPANQMVKCDPRQASYMACCMLYRGDVVPKNVNAAIATIKTKRTIQFV 403
S V E+T ++ N M DPR Y+ ++RG + K V+ I ++ K + FV
Sbjct: 284 SLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQILNVQNKNSSYFV 343
Query: 402 DLVSNRFQGRY-QLPATHRGARRRLGQGSTCXXXXXXXXXXXRSLGSP*PQFDLMYAKRA 226
+ + N + +P T + ST R + QF M+ ++A
Sbjct: 344 EWIPNNVKSSVCDIPPTG------IKMASTFVGNSTSIQEMFRRVSE---QFTAMFRRKA 394
Query: 225 FVHWYVGEGMEEGEFSEAREDLAALEKDYEE 133
F+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 395 FLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 425
>At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 73.7 bits (173), Expect = 8e-14
Identities = 43/151 (28%), Positives = 71/151 (47%), Gaps = 1/151 (0%)
Frame = -2
Query: 582 SFPVAEITNACFEPANQMVKCDPRQASYMACCMLYRGDVVPKNVNAAIATIKTKRTIQFV 403
S V E+T ++ N M DPR Y+ ++RG + K V+ + ++ K + FV
Sbjct: 283 SLTVPELTQQMWDSKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMLNVQNKNSSYFV 342
Query: 402 DLVSNRFQGRY-QLPATHRGARRRLGQGSTCXXXXXXXXXXXRSLGSP*PQFDLMYAKRA 226
+ + N + +P T L ST R + QF M+ ++A
Sbjct: 343 EWIPNNVKSTVCDIPPTG------LKMASTFIGNSTSIQEMFRRVSE---QFTAMFRRKA 393
Query: 225 FVHWYVGEGMEEGEFSEAREDLAALEKDYEE 133
F+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 394 FLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 424
>At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 73.7 bits (173), Expect = 8e-14
Identities = 43/151 (28%), Positives = 71/151 (47%), Gaps = 1/151 (0%)
Frame = -2
Query: 582 SFPVAEITNACFEPANQMVKCDPRQASYMACCMLYRGDVVPKNVNAAIATIKTKRTIQFV 403
S V E+T ++ N M DPR Y+ ++RG + K V+ + ++ K + FV
Sbjct: 283 SLTVPELTQQMWDSKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMLNVQNKNSSYFV 342
Query: 402 DLVSNRFQGRY-QLPATHRGARRRLGQGSTCXXXXXXXXXXXRSLGSP*PQFDLMYAKRA 226
+ + N + +P T L ST R + QF M+ ++A
Sbjct: 343 EWIPNNVKSTVCDIPPTG------LKMASTFIGNSTSIQEMFRRVSE---QFTAMFRRKA 393
Query: 225 FVHWYVGEGMEEGEFSEAREDLAALEKDYEE 133
F+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 394 FLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 424
>At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly
identical to SP|P29514 Tubulin beta-6 chain {Arabidopsis
thaliana}
Length = 449
Score = 73.7 bits (173), Expect = 8e-14
Identities = 42/147 (28%), Positives = 70/147 (47%)
Frame = -2
Query: 573 VAEITNACFEPANQMVKCDPRQASYMACCMLYRGDVVPKNVNAAIATIKTKRTIQFVDLV 394
V E+T ++ N M DPR Y+ ++RG + K V+ + ++ K + FV+ +
Sbjct: 286 VPELTQQMWDSKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWI 345
Query: 393 SNRFQGRYQLPATHRGARRRLGQGSTCXXXXXXXXXXXRSLGSP*PQFDLMYAKRAFVHW 214
N + + A R L ST R + QF M+ ++AF+HW
Sbjct: 346 PNNVKS-----SVCDIAPRGLSMASTFIGNSTSIQEMFRRVSE---QFTAMFRRKAFLHW 397
Query: 213 YVGEGMEEGEFSEAREDLAALEKDYEE 133
Y GEGM+E EF+EA ++ L +Y++
Sbjct: 398 YTGEGMDEMEFTEAESNMNDLVSEYQQ 424
>At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly
identical to SP|P29513 Tubulin beta-5 chain {Arabidopsis
thaliana}
Length = 449
Score = 72.9 bits (171), Expect = 1e-13
Identities = 43/151 (28%), Positives = 71/151 (47%), Gaps = 1/151 (0%)
Frame = -2
Query: 582 SFPVAEITNACFEPANQMVKCDPRQASYMACCMLYRGDVVPKNVNAAIATIKTKRTIQFV 403
S V E+T ++ N M DPR Y+ ++RG + K V+ I I+ K + FV
Sbjct: 284 SLTVPELTQQMWDSKNMMCAADPRHGRYLTASAIFRGQMSTKEVDEQILNIQNKNSSYFV 343
Query: 402 DLVSNRFQGRY-QLPATHRGARRRLGQGSTCXXXXXXXXXXXRSLGSP*PQFDLMYAKRA 226
+ + N + +P + L +T R + QF M+ ++A
Sbjct: 344 EWIPNNVKSSVCDIPP------KGLKMAATFVGNSTSIQEMFRRVSE---QFTAMFRRKA 394
Query: 225 FVHWYVGEGMEEGEFSEAREDLAALEKDYEE 133
F+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 395 FLHWYTGEGMDEMEFTEAESNMNDLVAEYQQ 425
>At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8)
identical to SP|P29516 Tubulin beta-8 chain {Arabidopsis
thaliana}; supporting cDNA gi|15451225|gb|AY054693.1|
Length = 449
Score = 72.5 bits (170), Expect = 2e-13
Identities = 42/148 (28%), Positives = 70/148 (47%), Gaps = 1/148 (0%)
Frame = -2
Query: 573 VAEITNACFEPANQMVKCDPRQASYMACCMLYRGDVVPKNVNAAIATIKTKRTIQFVDLV 394
V E+T ++ N M DPR Y+ ++RG + K V+ + ++ K + FV+ +
Sbjct: 286 VPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWI 345
Query: 393 SNRFQGRY-QLPATHRGARRRLGQGSTCXXXXXXXXXXXRSLGSP*PQFDLMYAKRAFVH 217
N + +P T L ST R + QF M+ ++AF+H
Sbjct: 346 PNNVKSTVCDIPPTG------LKMASTFIGNSTSIQEMFRRVSE---QFTAMFRRKAFLH 396
Query: 216 WYVGEGMEEGEFSEAREDLAALEKDYEE 133
WY GEGM+E EF+EA ++ L +Y++
Sbjct: 397 WYTGEGMDEMEFTEAESNMNDLVSEYQQ 424
>At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical to
GB:M84704 SP|P29515 Tubulin beta-7 chain {Arabidopsis
thaliana}
Length = 449
Score = 72.5 bits (170), Expect = 2e-13
Identities = 42/148 (28%), Positives = 70/148 (47%), Gaps = 1/148 (0%)
Frame = -2
Query: 573 VAEITNACFEPANQMVKCDPRQASYMACCMLYRGDVVPKNVNAAIATIKTKRTIQFVDLV 394
V E+T ++ N M DPR Y+ ++RG + K V+ + ++ K + FV+ +
Sbjct: 286 VPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMLNVQNKNSSYFVEWI 345
Query: 393 SNRFQGRY-QLPATHRGARRRLGQGSTCXXXXXXXXXXXRSLGSP*PQFDLMYAKRAFVH 217
N + +P T L ST R + QF M+ ++AF+H
Sbjct: 346 PNNVKSTVCDIPPTG------LKMASTFIGNSTSIQEMFRRVSE---QFTAMFRRKAFLH 396
Query: 216 WYVGEGMEEGEFSEAREDLAALEKDYEE 133
WY GEGM+E EF+EA ++ L +Y++
Sbjct: 397 WYTGEGMDEMEFTEAESNMNDLVSEYQQ 424
>At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly
identical to SP|P24636 Tubulin beta-4 chain {Arabidopsis
thaliana}
Length = 444
Score = 71.7 bits (168), Expect = 3e-13
Identities = 42/151 (27%), Positives = 72/151 (47%)
Frame = -2
Query: 585 TSFPVAEITNACFEPANQMVKCDPRQASYMACCMLYRGDVVPKNVNAAIATIKTKRTIQF 406
++ V E+T ++ N M DPR Y+ ++RG + K V+ + I+ K + F
Sbjct: 282 SALSVPELTQQMWDAKNMMCAADPRHGRYLTASAVFRGKLSTKEVDEQMMNIQNKNSSYF 341
Query: 405 VDLVSNRFQGRYQLPATHRGARRRLGQGSTCXXXXXXXXXXXRSLGSP*PQFDLMYAKRA 226
V+ + N + + A + L ST R + QF M+ ++A
Sbjct: 342 VEWIPNNVKS-----SVCDIAPKGLKMASTFIGNSTSIQEMFRRVSE---QFTAMFRRKA 393
Query: 225 FVHWYVGEGMEEGEFSEAREDLAALEKDYEE 133
F+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 394 FLHWYTGEGMDEMEFTEAESNMNDLVAEYQQ 424
>At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly
identical to SP|P29517 Tubulin beta-9 chain {Arabidopsis
thaliana}
Length = 444
Score = 70.1 bits (164), Expect = 1e-12
Identities = 41/151 (27%), Positives = 71/151 (47%)
Frame = -2
Query: 585 TSFPVAEITNACFEPANQMVKCDPRQASYMACCMLYRGDVVPKNVNAAIATIKTKRTIQF 406
++ V E+T ++ N M DPR Y+ ++RG + K V+ + ++ K + F
Sbjct: 282 SALSVPELTQQMWDAKNMMCAADPRHGRYLTASAVFRGKMSTKEVDEQMMNVQNKNSSYF 341
Query: 405 VDLVSNRFQGRYQLPATHRGARRRLGQGSTCXXXXXXXXXXXRSLGSP*PQFDLMYAKRA 226
V+ + N + + A L ST R + QF M+ ++A
Sbjct: 342 VEWIPNNVKS-----SVCDIAPTGLKMASTFIGNSTSIQEMFRRVSE---QFTAMFRRKA 393
Query: 225 FVHWYVGEGMEEGEFSEAREDLAALEKDYEE 133
F+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 394 FLHWYTGEGMDEMEFTEAESNMNDLVAEYQQ 424
>At5g33320.1 68418.m03955 triose phosphate/phosphate translocator,
putative similar to SWISS-PROT:P52178 triose
phosphate/phosphate translocator [Cauliflower] {Brassica
oleracea}
Length = 408
Score = 30.7 bits (66), Expect = 0.78
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -3
Query: 254 SSTSCTPSVLSCTGTSVRVWRRESSPKPVRTW 159
S + +P+V+S S R WR SS P+R W
Sbjct: 35 SDLNVSPNVVSIPSLSRRSWRLASSDSPLRAW 66
>At1g37130.1 68414.m04639 nitrate reductase 2 (NR2) identical to
SP|P11035 Nitrate reductase 2 (formerly EC 1.6.6.1)
(NR2) {Arabidopsis thaliana}
Length = 917
Score = 30.3 bits (65), Expect = 1.0
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = +3
Query: 138 RNPSRGQPGPHGLRRTLPPPYPHRRTSARKHAWRT*GRTV 257
R +R +PG +G+ R+ PP P R S + H +T +TV
Sbjct: 8 RQYARLEPGLNGVVRSYKPPVPGRSDSPKAHQNQTTNQTV 47
>At3g62210.1 68416.m06989 expressed protein contains Pfam profile
PF04396: Protein of unknown function, DUF537; expression
supported by MPSS
Length = 279
Score = 29.9 bits (64), Expect = 1.4
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +1
Query: 442 GRVHILGY-DVTTVQHTASHVTCLTGVAFHHLVGGLE 549
GRV I Y D + + H H TG+ HH+ G++
Sbjct: 59 GRVSISAYGDTSGIPHVIQHALNSTGIELHHVPAGVK 95
>At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin
(TUBG2) identical to SP|P38558 Tubulin gamma-2 chain
(Gamma-2 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 29.1 bits (62), Expect = 2.4
Identities = 10/37 (27%), Positives = 23/37 (62%)
Frame = -2
Query: 510 QASYMACCMLYRGDVVPKNVNAAIATIKTKRTIQFVD 400
QA Y++ + +G+V P V+ ++ I+ ++ + F+D
Sbjct: 316 QAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFID 352
>At1g68080.1 68414.m07777 expressed protein
Length = 383
Score = 29.1 bits (62), Expect = 2.4
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +1
Query: 394 HQVDELDSTLGFDGSDGRVHILGYDVTTVQ 483
HQ D + +GFD R+H+LG+DV ++Q
Sbjct: 209 HQ-DGSNQNIGFDVCVARLHLLGFDVHSLQ 237
>At1g73340.1 68414.m08489 cytochrome P450 family protein similar to
Cytochrome P450 90A1 (SP:Q42569) [Arabidopsis thaliana];
contains Pfam profile: PF00067 cytochrome P450
Length = 512
Score = 28.7 bits (61), Expect = 3.1
Identities = 17/56 (30%), Positives = 27/56 (48%)
Frame = -3
Query: 344 PGGDLAKVQRAVCMLSNTTAIAEAWARLDHSSTSCTPSVLSCTGTSVRVWRRESSP 177
PG +LA++Q A+ + T W +L S PS G +++ RR+S P
Sbjct: 456 PGAELARLQIALFLHYFITTYK--WTQLKEDRISFFPSARLVNGFKIQLNRRDSDP 509
>At1g51660.1 68414.m05820 mitogen-activated protein kinase kinase
(MAPKK), putative (MKK4) identical to MAP kinase kinase
4 [Arabidopsis thaliana] gi|3219271|dbj|BAA28830
gi_13265419
Length = 366
Score = 28.3 bits (60), Expect = 4.1
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 6/63 (9%)
Frame = +3
Query: 51 ASAP*KIFHWLSTLRLPHPRLQRSPCRLLRNPS--RGQPG----PHGLRRTLPPPYPHRR 212
A+A + H++S P +RS +LL++P R P P L + LPPP P
Sbjct: 301 ATASPEFRHFISCCLQREPGKRRSAMQLLQHPFILRASPSQNRSPQNLHQLLPPPRPLSS 360
Query: 213 TSA 221
+S+
Sbjct: 361 SSS 363
>At1g34360.1 68414.m04266 translation initiation factor 3 (IF-3)
family protein low similarity to Translation initiation
factor IF-3 from [subsp. Schizaphis graminum] {Buchnera
aphidicola} SP|P46243, {Salmonella typhimurium}
SP|P33321; contains Pfam profiles PF05198: Translation
initiation factor IF-3 N-terminal domain, PF00707:
Translation initiation factor IF-3 C-terminal domain
Length = 520
Score = 28.3 bits (60), Expect = 4.1
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = -3
Query: 602 ERPYHEPAFPSPRSQTHASSPPTRW*NATPVRQVT 498
+ P +P+ PSP PP R+ N P +Q T
Sbjct: 434 QAPNQQPSGPSPNRHPDRQGPPPRFQNQAPNQQPT 468
>At4g37480.1 68417.m05304 DNAJ heat shock N-terminal
domain-containing protein low similarity to J-Domain
(Residues 2-76) In The Escherichia coli N-Terminal
Fragment (Residues 2-108) Of The Molecular Chaperone
Dnaj GI:1942570; contains Pfam profile PF00226 DnaJ
domain
Length = 523
Score = 27.9 bits (59), Expect = 5.5
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +1
Query: 331 KSPPGTTVGGW*LIPTLKPVGHQVDELDSTLGFDGSDGRVHIL 459
+SPPG G L+ T+ +G DE S +DG+ + H++
Sbjct: 353 ESPPGNESGARLLVGTISGLGTIPDE-GSCYVYDGNGAKTHVI 394
>At4g32010.1 68417.m04557 transcriptional factor B3 family protein
low similarity to FUSCA3 [Arabidopsis thaliana]
GI:3582518, VIVIPAROUS1 protein [Triticum aestivum]
GI:7801376; contains Pfam profile PF02362: B3 DNA
binding domain
Length = 780
Score = 27.9 bits (59), Expect = 5.5
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Frame = -3
Query: 272 WARLDHSSTSCTPSV-LSCTGTSVRVWRRESSPKPVRTWLPSRRITK-KSAWTPLKARVR 99
W++L+ S ++ L + TS R R K R + S + + K W + +R
Sbjct: 419 WSKLEKSEDMAKDNLFLQSSLTSARKRVRNIGTKSKRLLIDSVDVLELKITWEEAQELLR 478
Query: 98 EPKSTKPMKYLL 63
P+STKP + L
Sbjct: 479 PPQSTKPSIFTL 490
>At3g46740.1 68416.m05074 chloroplast outer envelope protein,
putative similar to chloroplastic outer envelope
membrane protein (OEP75) [Pisum sativum] GI:633607;
contains Pfam profile PF01103: outer membrane protein,
OMP85 family
Length = 818
Score = 27.9 bits (59), Expect = 5.5
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -2
Query: 426 TKRTIQFVDLVSNRFQGRYQLPATHRGARRRLGQG 322
T+ IQF D + N +G Q+P R ++L QG
Sbjct: 367 TQLVIQFQDKLGNVVEGNTQVPVVRRELPKQLRQG 401
>At3g26855.1 68416.m03360 hypothetical protein
Length = 163
Score = 27.9 bits (59), Expect = 5.5
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -3
Query: 245 SCTPSVLSCTGTSVRVWRRESSPK 174
SC P +LS + VR W +SSPK
Sbjct: 114 SCNPMLLSTFPSIVRAWDGKSSPK 137
>At2g18760.1 68415.m02184 SNF2 domain-containing protein / helicase
domain-containing protein similar to SP|Q03468 Excision
repair protein ERCC-6 (Cockayne syndrome protein CSB)
{Homo sapiens}; contains PFam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain
Length = 1187
Score = 27.5 bits (58), Expect = 7.2
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -3
Query: 257 HSSTSCTPSVLSCTGTSVRVWRRES 183
H S PS++ C T +R WRRE+
Sbjct: 428 HFSKMYKPSIIICPVTLLRQWRREA 452
>At5g55330.1 68418.m06895 membrane bound O-acyl transferase (MBOAT)
family protein / wax synthase-related contains
similarity to wax synthase wax synthase - Simmondsia
chinensis, PID:g5020219 similar to wax synthase
[gi:5020219] from Simmondsia chinensis
Length = 346
Score = 27.1 bits (57), Expect = 9.6
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = +1
Query: 13 SFFYFISPECKTVRVRHKRYFIGLVLFGSLTLAFSGVHADFFV 141
++ Y+++P+ KT +R VLF + + FS VH+ F +
Sbjct: 20 TYCYYLTPKIKTSLLRLLSVLPVCVLFLIIPIFFSTVHSSFTI 62
>At3g09430.1 68416.m01120 hypothetical protein
Length = 247
Score = 27.1 bits (57), Expect = 9.6
Identities = 18/70 (25%), Positives = 30/70 (42%)
Frame = -3
Query: 281 AEAWARLDHSSTSCTPSVLSCTGTSVRVWRRESSPKPVRTWLPSRRITKKSAWTPLKARV 102
A+ WA +D ++ + T + S ++R S P PV P +I + P R
Sbjct: 23 ADLWAVIDSAAAAATIAGKSPKPLAIRYPNYNSPPTPVSYPSPQSKILQIPNRNPNLGRG 82
Query: 101 REPKSTKPMK 72
+S +P K
Sbjct: 83 LNEESNRPSK 92
>At1g20350.1 68414.m02539 mitochondrial import inner membrane
translocase subunit Tim17, putative similar to SP|Q9SP35
Mitochondrial import inner membrane translocase subunit
TIM17 {Arabidopsis thaliana}; contains Pfam profile
PF02466: Mitochondrial import inner membrane translocase
subunit Tim17
Length = 218
Score = 27.1 bits (57), Expect = 9.6
Identities = 27/100 (27%), Positives = 44/100 (44%), Gaps = 3/100 (3%)
Frame = -3
Query: 422 SVLSNSSTWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSN---TTAIAEAWARLDHS 252
S+LS ++T + G+ + + GG L + V ++ N +TA E + DH+
Sbjct: 92 SILSGAATGGFLSLRQGLGASARSALVGGVLLAMIEGVGIMLNKVQSTAHNEQFME-DHA 150
Query: 251 STSCTPSVLSCTGTSVRVWRRESSPKPVRTWLPSRRITKK 132
+TS + +G SV V SS +W S KK
Sbjct: 151 ATSLPYGMGQISGQSVPVPETSSSSSGSVSWFGSLFKKKK 190
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,049,053
Number of Sequences: 28952
Number of extensions: 316434
Number of successful extensions: 1179
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 1107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1167
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1197101088
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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