Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1169
         (650 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q49757 Cluster: Uncharacterized protein ML0607; n=19; A...    35   1.5  
UniRef50_A6PLD4 Cluster: Putative uncharacterized protein precur...    34   3.4  
UniRef50_Q0IHX4 Cluster: LOC779551 protein; n=1; Xenopus tropica...    33   4.5  
UniRef50_O05478 Cluster: LipA transcriptional activator; n=1; St...    33   5.9  
UniRef50_A3RK65 Cluster: CD3zeta-2; n=6; Euteleostei|Rep: CD3zet...    33   7.8  

>UniRef50_Q49757 Cluster: Uncharacterized protein ML0607; n=19;
           Actinomycetales|Rep: Uncharacterized protein ML0607 -
           Mycobacterium leprae
          Length = 279

 Score = 35.1 bits (77), Expect = 1.5
 Identities = 17/36 (47%), Positives = 21/36 (58%)
 Frame = +2

Query: 269 SLGY*TSSPCVSSTKEATLSPRLNTNQTTIFSKDST 376
           S GY   SP  +S  EA L+PR NT QT I ++  T
Sbjct: 9   STGYVYESPATASFNEARLTPRSNTRQTVILNRVET 44


>UniRef50_A6PLD4 Cluster: Putative uncharacterized protein
           precursor; n=1; Victivallis vadensis ATCC BAA-548|Rep:
           Putative uncharacterized protein precursor - Victivallis
           vadensis ATCC BAA-548
          Length = 779

 Score = 33.9 bits (74), Expect = 3.4
 Identities = 17/53 (32%), Positives = 28/53 (52%)
 Frame = -2

Query: 268 KDY*DNQTEANLNKNLVRAAGDRGGWEKGEKTVGRKRVLCEIVERLDQVTIEQ 110
           +D+ +       + NL   A DR  WE  +K   R++++ EIV+R D V  E+
Sbjct: 180 RDFFERLENGAFDGNLYPPASDRTAWEAVKKLPDRQQLIREIVDRADAVLKEE 232


>UniRef50_Q0IHX4 Cluster: LOC779551 protein; n=1; Xenopus
           tropicalis|Rep: LOC779551 protein - Xenopus tropicalis
           (Western clawed frog) (Silurana tropicalis)
          Length = 270

 Score = 33.5 bits (73), Expect = 4.5
 Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = -2

Query: 256 DNQ-TEANLNKNLVRAAGDRGGWEKGEKTVGRKRVLCEIVERLDQ 125
           DN  TE  L   ++ +A + G ++  E + GRK + CE+  RLD+
Sbjct: 103 DNSLTEKLLQDGVISSAAENGFYKSVEPSDGRKEMSCEVTTRLDE 147


>UniRef50_O05478 Cluster: LipA transcriptional activator; n=1;
           Streptomyces sp.|Rep: LipA transcriptional activator -
           Streptomyces sp
          Length = 934

 Score = 33.1 bits (72), Expect = 5.9
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = +1

Query: 127 DRDARRSHKGPAFDRLFFLPSPNPLCPQPLSRDSYLDSL 243
           DR  R +H  PA DR   +P+P P  P+PL+ +  L  L
Sbjct: 48  DRGGRATHAAPA-DRAGPVPAPEPFTPEPLTPEELLARL 85


>UniRef50_A3RK65 Cluster: CD3zeta-2; n=6; Euteleostei|Rep: CD3zeta-2
           - Salmo salar (Atlantic salmon)
          Length = 155

 Score = 32.7 bits (71), Expect = 7.8
 Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = +2

Query: 44  CYI*KKFIAVFGLVII-LNLSDKLFDGNLIETLDDLTKDPLSTD 172
           CYI   F+ ++GLVI  L L +K F G ++E  DD+  D   TD
Sbjct: 32  CYILDGFLLLYGLVITGLLLREKFFKGKILED-DDIYTDLKPTD 74


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 556,805,783
Number of Sequences: 1657284
Number of extensions: 10224399
Number of successful extensions: 24256
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 23426
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24243
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 48760335122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)