Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1169
         (650 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g39590.1 68417.m05597 kelch repeat-containing F-box family pr...    29   2.7  
At4g38500.1 68417.m05444 expressed protein contains Pfam profile...    28   6.2  
At1g34110.1 68414.m04230 leucine-rich repeat transmembrane prote...    27   8.2  

>At4g39590.1 68417.m05597 kelch repeat-containing F-box family
           protein contains F-box domain Pfam:PF00646 and Kelch
           motif Pfam:PF01344
          Length = 402

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = +1

Query: 193 NPLCPQPLSRD-SYLDSLPSDCLSNLFTRLLNVF 291
           N   P P++R+ + +DSLP+D L N F R+  ++
Sbjct: 24  NKETPSPVTREPTSIDSLPNDLLLNCFARVSRMY 57


>At4g38500.1 68417.m05444 expressed protein contains Pfam profile:
           PF04765 protein of unknown function (DUF616)
          Length = 499

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +1

Query: 166 DRLFFLPSPNPLCPQPLSRDSYLDSLPSDCLSNLFTRLL 282
           D + F+P P   CP P+  D     LPSD  ++   R L
Sbjct: 101 DTIGFVPKPQHRCPIPVDYDPDKVLLPSDKTADTIVRNL 139


>At1g34110.1 68414.m04230 leucine-rich repeat transmembrane protein
           kinase, putative contains similarity to receptor protein
           kinase-like protein GI:10177178 from [Arabidopsis
           thaliana]
          Length = 1045

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = +2

Query: 71  VFGLVIILNLSDKLFDGNLIETLDDLTK 154
           V  L I L+LS   F GN+ ET  DLT+
Sbjct: 576 VTSLTINLDLSYNTFTGNIPETFSDLTQ 603


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,064,983
Number of Sequences: 28952
Number of extensions: 223122
Number of successful extensions: 619
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 575
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 619
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)