Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1167
         (631 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   3.9  
SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces p...    26   5.2  
SPCC126.01c ||SPCC576.18c|conserved fungal protein|Schizosacchar...    25   9.0  

>SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = +1

Query: 433 FLIY*KEIAEWHTDFFSIVRLILNKRCIQIV 525
           F+ Y K+  E+ +  FSI++ +LN+R +  +
Sbjct: 76  FVYYCKQALEFISTVFSIIKFLLNRRKVSFL 106


>SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 723

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = +2

Query: 560 SHLFTHNYDHTLNRFEK 610
           SH   HN DH L R EK
Sbjct: 435 SHTLLHNRDHELERLEK 451


>SPCC126.01c ||SPCC576.18c|conserved fungal
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 369

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 8/25 (32%), Positives = 17/25 (68%)
 Frame = +2

Query: 539 LTQKGYLSHLFTHNYDHTLNRFEKS 613
           L + G + H++T ++DHT+ ++  S
Sbjct: 96  LRKDGKVRHIYTGSWDHTIKKWNVS 120


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,052,909
Number of Sequences: 5004
Number of extensions: 33408
Number of successful extensions: 80
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)