Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1167
         (631 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g20050.1 68414.m02510 C-8,7 sterol isomerase identical to C-8...    28   5.9  
At1g55010.1 68414.m06283 plant defensin-fusion protein, putative...    27   7.8  

>At1g20050.1 68414.m02510 C-8,7 sterol isomerase identical to C-8,7
           sterol isomerase GI:11279073 from [Arabidopsis thaliana]
           (Plant Mol. Biol. 38 (5), 807-815 (1998))
          Length = 223

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 417 CAISFIPNILEGDSRMAYRFFFYSTF 494
           C + FI  ILEGD+     F++YS +
Sbjct: 156 CLVYFITAILEGDNFATNSFYYYSYY 181


>At1g55010.1 68414.m06283 plant defensin-fusion protein, putative
           (PDF1.5) plant defensin protein family member, personal
           communication, Bart Thomma
           (Bart.Thomma@agr.kuleuven.ac.be); similar to antifungal
           protein 4 [Raphanus sativus] gi|1655683|emb|CAA65983
          Length = 80

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = -2

Query: 588 WS*LCVNK*ER*PFCVNSDKINDLYASFIQN*TYYRKKICMPFC 457
           WS  CVN  +    C+N+D+ ND Y +      +YR   C   C
Sbjct: 39  WSGRCVNDYQCRDHCINNDRGNDGYCA--GGYPWYRSCFCFFSC 80


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,981,040
Number of Sequences: 28952
Number of extensions: 152234
Number of successful extensions: 246
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 246
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 246
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1285411824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)