Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1165
         (648 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58590| Best HMM Match : Polysacc_deac_1 (HMM E-Value=2.6e-08)       47   1e-05
SB_7303| Best HMM Match : No HMM Matches (HMM E-Value=.)               46   4e-05
SB_641| Best HMM Match : No HMM Matches (HMM E-Value=.)                34   0.087
SB_14350| Best HMM Match : DUF1208 (HMM E-Value=0)                     32   0.35 
SB_19263| Best HMM Match : TAP42 (HMM E-Value=0.25)                    29   4.3  
SB_31398| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  
SB_19631| Best HMM Match : zf-CCHC (HMM E-Value=0.0088)                27   9.9  

>SB_58590| Best HMM Match : Polysacc_deac_1 (HMM E-Value=2.6e-08)
          Length = 893

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 17/43 (39%), Positives = 28/43 (65%)
 Frame = +3

Query: 114 KFIEEMLEKNDVYFTSLIQVIQWMQNPTELSSLRDFQEWKQDK 242
           +F+ E L + DVYF ++ Q I+W++ PT L  ++ F  W+ DK
Sbjct: 811 RFLTEALSQGDVYFVTVSQAIEWIKTPTPLEKIKTFAPWQCDK 853


>SB_7303| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 56

 Score = 45.6 bits (103), Expect = 4e-05
 Identities = 17/52 (32%), Positives = 30/52 (57%)
 Frame = +3

Query: 15  NFNRHYTTNRAPLGFHFHASWLKSKKEYRDELIKFIEEMLEKNDVYFTSLIQ 170
           NF  HY +N+AP G H H++W      + + L KF+  +  ++DV+  ++ Q
Sbjct: 5   NFQYHYHSNKAPFGLHAHSAWFSQSTGHMEALRKFLTLVASRDDVWVLTVSQ 56


>SB_641| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 530

 Score = 34.3 bits (75), Expect = 0.087
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +2

Query: 257 QPFCSLPNACPLTTRELPGETLRLFTCMECPNNYPWILDPQGE 385
           +P C+ PN C  TT +       + TC +CP ++P   +P GE
Sbjct: 492 KPRCTTPNVCHYTTPQ----DFYMPTCSDCPKHFPSPTNPDGE 530



 Score = 28.7 bits (61), Expect = 4.3
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 168 QVIQWMQNPTELSSLRDFQEW 230
           QVI+WM+NP +++    F  W
Sbjct: 465 QVIEWMKNPQDVNGANGFPAW 485


>SB_14350| Best HMM Match : DUF1208 (HMM E-Value=0)
          Length = 280

 Score = 32.3 bits (70), Expect = 0.35
 Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
 Frame = +3

Query: 30  YTTNRAPL---GFHFHASWLKSKKEYRDELIKFIEE-MLEKNDVYFTSLIQVIQWMQNPT 197
           Y  N AP    G H  A  L + ++YRD  +  IEE M++K  +Y T   Q    ++N +
Sbjct: 74  YAENEAPSMKEGLHVLAECLAAVQDYRDAEVHRIEENMVQKLSIYDTKCKQARNDVKNSS 133

Query: 198 ELSS 209
            L S
Sbjct: 134 SLCS 137


>SB_19263| Best HMM Match : TAP42 (HMM E-Value=0.25)
          Length = 303

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +3

Query: 189 NPTELSSLRDFQEWKQDKCDVKVNLSV 269
           NP +L   RD+ +WK   C V +  +V
Sbjct: 166 NPEKLQKARDWDDWKDGLCGVAIGYTV 192


>SB_31398| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1019

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/42 (28%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
 Frame = +3

Query: 111 IKFIEEMLEKNDVYFTSLIQVIQWMQNPTELS--SLRDFQEW 230
           +K ++ M+EK+++Y    ++ +  + N T+L+  +L  F+EW
Sbjct: 816 LKQVKNMMEKDEIYTGKDLEELDKVNNETKLNHRNLFRFKEW 857


>SB_19631| Best HMM Match : zf-CCHC (HMM E-Value=0.0088)
          Length = 329

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/48 (27%), Positives = 25/48 (52%)
 Frame = +3

Query: 243 CDVKVNLSVLCRTPVH*QLESYQERHYVFSLVWSVLTTIHGSWILRAK 386
           C  K +L V+CR     Q E+ ++R  + S++     T    W+++A+
Sbjct: 117 CHKKNHLQVMCRRNCLTQKETEKDRDLLSSVIQKTHETKKSDWLIQAQ 164


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,528,440
Number of Sequences: 59808
Number of extensions: 384448
Number of successful extensions: 864
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 822
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 863
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)