Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1165
         (648 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g06690.1 68418.m00756 thioredoxin family protein low similiar...    29   2.7  
At2g16400.1 68415.m01877 homeodomain-containing protein                27   8.1  

>At5g06690.1 68418.m00756 thioredoxin family protein low similiarity
           to SP|P34723 Thioredoxin {Penicillium chrysogenum};
           contains Pfam profile: PF00085 Thioredoxin
          Length = 210

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 16/70 (22%), Positives = 31/70 (44%)
 Frame = +3

Query: 48  PLGFHFHASWLKSKKEYRDELIKFIEEMLEKNDVYFTSLIQVIQWMQNPTELSSLRDFQE 227
           P+   + ASW +     + +L K   E   +   Y+  + +V Q +     +S +   Q 
Sbjct: 120 PIIIEWMASWCRKCIYLKPKLEKLAAEYNNRAKFYYVDVNKVPQTLVKRGNISKMPTIQL 179

Query: 228 WKQDKCDVKV 257
           WK+D+   +V
Sbjct: 180 WKEDEMKEEV 189


>At2g16400.1 68415.m01877 homeodomain-containing protein
          Length = 482

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 20/89 (22%), Positives = 40/89 (44%), Gaps = 3/89 (3%)
 Frame = +3

Query: 141 NDVYFTSLIQVIQWMQNPTELSSLRDFQEWKQDKCDVKVNLSVLCRTPVH*QLESYQ--- 311
           N+V  +  IQV+  +   +++  ++D   W+  + + +    V+ R  +  Q+E+ +   
Sbjct: 40  NNVSPSKEIQVLSSLGGVSQMVEIQDSGSWRDQEDNDRNRFPVMRRLGLSSQIETSRGNN 99

Query: 312 ERHYVFSLVWSVLTTIHGSWILRAKDTTL 398
              Y   +V     TIH S  L+A    L
Sbjct: 100 NNEYATQVVSGFTRTIHNSKYLKAAQELL 128


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,623,013
Number of Sequences: 28952
Number of extensions: 266460
Number of successful extensions: 696
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 681
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 695
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)