Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1164
         (601 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g73680.1 68414.m08532 pathogen-responsive alpha-dioxygenase, ...    23   4.7  
At4g11550.1 68417.m01852 DC1 domain-containing protein contains ...    27   9.5  

>At1g73680.1 68414.m08532 pathogen-responsive alpha-dioxygenase,
           putative similar to pathogen-inducible alpha-dioxygenase
           [Nicotiana attenuata] GI:12539609; contains Pfam profile
           PF03098: Animal haem peroxidase
          Length = 631

 Score = 23.4 bits (48), Expect(2) = 4.7
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -1

Query: 223 YIDFDS*KMYATANLV 176
           Y DFD  K+Y TA LV
Sbjct: 286 YPDFDDEKLYRTARLV 301



 Score = 23.0 bits (47), Expect(2) = 4.7
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -1

Query: 370 NSWSGLILTRSLFI 329
           NSWSG  L ++LF+
Sbjct: 259 NSWSGFSLLQALFV 272


>At4g11550.1 68417.m01852 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 668

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -1

Query: 415 LYYIVDYENRIGHGSNSWSGLILT 344
           LYYI   E +  +G ++WS L+LT
Sbjct: 492 LYYIPPEEEKQCNGCDNWSSLVLT 515


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,215,444
Number of Sequences: 28952
Number of extensions: 163295
Number of successful extensions: 344
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 342
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 344
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1187288784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)