BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ce--1163 (424 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_933| Best HMM Match : ExoD (HMM E-Value=6) 28 3.7 SB_28276| Best HMM Match : Cerato-platanin (HMM E-Value=6.7) 27 4.8 SB_49478| Best HMM Match : Scramblase (HMM E-Value=0.0015) 27 6.4 SB_20003| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.4 SB_58733| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5 >SB_933| Best HMM Match : ExoD (HMM E-Value=6) Length = 555 Score = 27.9 bits (59), Expect = 3.7 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%) Frame = +1 Query: 265 PIRLKLKAPEFLTEGNIVVFGFVG-IAALSPLDARVKLFHSYPG 393 P ++ K P L +G I+ GF+G ++AL ++LF G Sbjct: 100 PYVIRPKGPRLLRQGTIMKAGFIGLVSALGVYACNLELFRRCAG 143 >SB_28276| Best HMM Match : Cerato-platanin (HMM E-Value=6.7) Length = 225 Score = 27.5 bits (58), Expect = 4.8 Identities = 15/50 (30%), Positives = 23/50 (46%) Frame = +3 Query: 273 VEIESPGILNGGEYRGFWVRWDSGIISAGREGEAIPFISWSDPEPFPVYY 422 + I + GI + + FWV + S + G I W+DP+P V Y Sbjct: 1 LNIATSGITSAEKRMVFWVDFRSANLVLGSGATVIA--QWTDPDPLEVGY 48 >SB_49478| Best HMM Match : Scramblase (HMM E-Value=0.0015) Length = 334 Score = 27.1 bits (57), Expect = 6.4 Identities = 13/50 (26%), Positives = 24/50 (48%) Frame = -3 Query: 302 VKNSGAFNFNLIGLGSFFLMTLLAFPQPPIITSYIGSDSCGPVVSAMWAS 153 VK+SG+F ++G+G + M ++ Q + SCG W++ Sbjct: 166 VKSSGSFLRGILGMGRHYYMKVIDVNQNTCLLELEHPLSCGAPALCPWSA 215 >SB_20003| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 394 Score = 27.1 bits (57), Expect = 6.4 Identities = 16/49 (32%), Positives = 23/49 (46%) Frame = +1 Query: 142 RAANDAHIALTTGPQESDPMYEVMIGGWGNAKSVIRKKEPSPIRLKLKA 288 RA+ A+ P+E D M M +++S R PSP L LK+ Sbjct: 48 RASERANAPTIEVPEEEDQMSRPMTTSRASSRSASRDASPSPDVLGLKS 96 >SB_58733| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 2060 Score = 26.6 bits (56), Expect = 8.5 Identities = 13/50 (26%), Positives = 25/50 (50%) Frame = +1 Query: 205 EVMIGGWGNAKSVIRKKEPSPIRLKLKAPEFLTEGNIVVFGFVGIAALSP 354 ++ IG + ++ ++PSP+ L + ++EG V+ V IA P Sbjct: 401 DIFIGSHLDILKILSHRQPSPLLLVMDNCHAVSEGGSVMKDLVNIARQQP 450 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 12,552,547 Number of Sequences: 59808 Number of extensions: 265396 Number of successful extensions: 797 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 756 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 796 length of database: 16,821,457 effective HSP length: 75 effective length of database: 12,335,857 effective search space used: 801830705 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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