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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1163
         (424 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_933| Best HMM Match : ExoD (HMM E-Value=6)                          28   3.7  
SB_28276| Best HMM Match : Cerato-platanin (HMM E-Value=6.7)           27   4.8  
SB_49478| Best HMM Match : Scramblase (HMM E-Value=0.0015)             27   6.4  
SB_20003| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.4  
SB_58733| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.5  

>SB_933| Best HMM Match : ExoD (HMM E-Value=6)
          Length = 555

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +1

Query: 265 PIRLKLKAPEFLTEGNIVVFGFVG-IAALSPLDARVKLFHSYPG 393
           P  ++ K P  L +G I+  GF+G ++AL      ++LF    G
Sbjct: 100 PYVIRPKGPRLLRQGTIMKAGFIGLVSALGVYACNLELFRRCAG 143


>SB_28276| Best HMM Match : Cerato-platanin (HMM E-Value=6.7)
          Length = 225

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = +3

Query: 273 VEIESPGILNGGEYRGFWVRWDSGIISAGREGEAIPFISWSDPEPFPVYY 422
           + I + GI +  +   FWV + S  +  G     I    W+DP+P  V Y
Sbjct: 1   LNIATSGITSAEKRMVFWVDFRSANLVLGSGATVIA--QWTDPDPLEVGY 48


>SB_49478| Best HMM Match : Scramblase (HMM E-Value=0.0015)
          Length = 334

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 13/50 (26%), Positives = 24/50 (48%)
 Frame = -3

Query: 302 VKNSGAFNFNLIGLGSFFLMTLLAFPQPPIITSYIGSDSCGPVVSAMWAS 153
           VK+SG+F   ++G+G  + M ++   Q   +       SCG      W++
Sbjct: 166 VKSSGSFLRGILGMGRHYYMKVIDVNQNTCLLELEHPLSCGAPALCPWSA 215


>SB_20003| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 394

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = +1

Query: 142 RAANDAHIALTTGPQESDPMYEVMIGGWGNAKSVIRKKEPSPIRLKLKA 288
           RA+  A+      P+E D M   M     +++S  R   PSP  L LK+
Sbjct: 48  RASERANAPTIEVPEEEDQMSRPMTTSRASSRSASRDASPSPDVLGLKS 96


>SB_58733| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2060

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 13/50 (26%), Positives = 25/50 (50%)
 Frame = +1

Query: 205 EVMIGGWGNAKSVIRKKEPSPIRLKLKAPEFLTEGNIVVFGFVGIAALSP 354
           ++ IG   +   ++  ++PSP+ L +     ++EG  V+   V IA   P
Sbjct: 401 DIFIGSHLDILKILSHRQPSPLLLVMDNCHAVSEGGSVMKDLVNIARQQP 450


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,552,547
Number of Sequences: 59808
Number of extensions: 265396
Number of successful extensions: 797
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 796
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 801830705
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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