Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1163
(424 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g52460.1 68416.m05769 hydroxyproline-rich glycoprotein family... 31 0.43
At2g19420.1 68415.m02265 hypothetical protein 29 1.7
At4g38770.1 68417.m05490 proline-rich family protein (PRP4) simi... 28 3.0
At5g13210.1 68418.m01516 expressed protein 27 4.0
At1g49430.1 68414.m05541 long-chain-fatty-acid--CoA ligase / lon... 27 4.0
At2g24250.1 68415.m02896 F-box family protein contains Pfam:PF00... 27 5.2
At5g15650.1 68418.m01831 reversibly glycosylated polypeptide-2 (... 27 6.9
At1g12370.2 68414.m01430 type II CPD photolyase PHR1 (PHR1) near... 27 6.9
At1g12370.1 68414.m01429 type II CPD photolyase PHR1 (PHR1) near... 27 6.9
At5g50400.1 68418.m06242 calcineurin-like phosphoesterase family... 26 9.1
At3g08900.1 68416.m01036 reversibly glycosylated polypeptide-3 (... 26 9.1
At3g02230.1 68416.m00204 reversibly glycosylated polypeptide-1 (... 26 9.1
At2g13620.1 68415.m01501 cation/hydrogen exchanger, putative (CH... 26 9.1
>At3g52460.1 68416.m05769 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 300
Score = 30.7 bits (66), Expect = 0.43
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = -1
Query: 415 TGKGSGSDQDMNGIASPSRPAEIMPLSQRTQKPRYSPPLRIPG 287
TG G S++D+N P P + P +TQ+ Y P + PG
Sbjct: 15 TGPGQNSERDIN--QPPPPPPQSQPPPPQTQQQTYPPVMGYPG 55
>At2g19420.1 68415.m02265 hypothetical protein
Length = 144
Score = 28.7 bits (61), Expect = 1.7
Identities = 23/94 (24%), Positives = 41/94 (43%), Gaps = 3/94 (3%)
Frame = +1
Query: 133 FKVRAANDAHIALT--TG-PQESDPMYEVMIGGWGNAKSVIRKKEPSPIRLKLKAPEFLT 303
F V+ ND ++L TG ++S + I + + + K+P P + +L PEF
Sbjct: 31 FTVKIENDICVSLVWNTGMTKKSRGKKRIRINVYRPKIAPAKNKKPKPTKEQLMDPEFSD 90
Query: 304 EGNIVVFGFVGIAALSPLDARVKLFHSYPGLIRN 405
E + GF + PL + + + P R+
Sbjct: 91 EDVLTSLGFDDGGYIIPLPKKSLMLINLPDSFRD 124
>At4g38770.1 68417.m05490 proline-rich family protein (PRP4) similar
to proline-rich protein [Arabidopsis thaliana]
gi|6782442|gb|AAF28388; contains proline-rich extensin
domains, INTERPRO:IPR002965
Length = 448
Score = 27.9 bits (59), Expect = 3.0
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = -1
Query: 358 PAEIMPLSQRTQKPRYSPPLRIP 290
P E+ P ++ P+YSPP+ +P
Sbjct: 171 PLELPPFLKKPCPPKYSPPVEVP 193
>At5g13210.1 68418.m01516 expressed protein
Length = 673
Score = 27.5 bits (58), Expect = 4.0
Identities = 16/61 (26%), Positives = 28/61 (45%)
Frame = +1
Query: 172 TTGPQESDPMYEVMIGGWGNAKSVIRKKEPSPIRLKLKAPEFLTEGNIVVFGFVGIAALS 351
T+GP SDP + M+ + N+ V P + K+ +L+ GN + F + +
Sbjct: 25 TSGP--SDPFMDAMVSNFNNSARVNNVNSPPMGYTENKSATYLSSGNPCLDFFFHVVPST 82
Query: 352 P 354
P
Sbjct: 83 P 83
>At1g49430.1 68414.m05541 long-chain-fatty-acid--CoA ligase /
long-chain acyl-CoA synthetase nearly identical to acyl
CoA synthetase (MF45P) GI:1617268 from [Brassica napus]
Length = 665
Score = 27.5 bits (58), Expect = 4.0
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -3
Query: 386 YEWNSFTLASSGDNAAIPTNPKTTIFPSVKNSG 288
+ WN F+L + D A +P KT I + SG
Sbjct: 201 FSWNEFSLMGNLDEANLPRKRKTDICTIMYTSG 233
>At2g24250.1 68415.m02896 F-box family protein contains Pfam:PF00646
F-box domain
Length = 374
Score = 27.1 bits (57), Expect = 5.2
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +1
Query: 175 TGPQESDPMYEVMIGGWGNAKSVIRKKEPSPIRLKLK 285
T P +D E +GG G KS + PSP++ +K
Sbjct: 91 TPPDAADASSEYFLGGLGQDKSNDHVELPSPLQCSVK 127
>At5g15650.1 68418.m01831 reversibly glycosylated polypeptide-2
(RGP2) identical to reversibly glycosylated
polypeptide-2 [Arabidopsis thaliana] GI:2317731
Length = 360
Score = 26.6 bits (56), Expect = 6.9
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -3
Query: 341 AIPTNPKTTIFPSVKNSGAFNFNLIGLGSFF 249
A+ T PK T+FP + AF+ +LIG +F
Sbjct: 202 AVMTIPKGTLFPMCGMNLAFDRDLIGPAMYF 232
>At1g12370.2 68414.m01430 type II CPD photolyase PHR1 (PHR1) nearly
identical to type II CPD photolyase PHR1 [Arabidopsis
thaliana] GI:2984707; similar to class II DNA photolyase
(GI:5081541) [Chlamydomonas reinhardtii]; supporting
cDNA gi|2984706|gb|AF053365.1|AF053365
Length = 496
Score = 26.6 bits (56), Expect = 6.9
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = +3
Query: 327 VRWDSGIISAGREGEAIPFISWSDP 401
V WDS I REG +P I W P
Sbjct: 208 VDWDSLIDKVVREGAEVPEIEWCVP 232
>At1g12370.1 68414.m01429 type II CPD photolyase PHR1 (PHR1) nearly
identical to type II CPD photolyase PHR1 [Arabidopsis
thaliana] GI:2984707; similar to class II DNA photolyase
(GI:5081541) [Chlamydomonas reinhardtii]; supporting
cDNA gi|2984706|gb|AF053365.1|AF053365
Length = 490
Score = 26.6 bits (56), Expect = 6.9
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = +3
Query: 327 VRWDSGIISAGREGEAIPFISWSDP 401
V WDS I REG +P I W P
Sbjct: 208 VDWDSLIDKVVREGAEVPEIEWCVP 232
>At5g50400.1 68418.m06242 calcineurin-like phosphoesterase family
protein contains Pfam profile: PF00149 calcineurin-like
phosphoesterase
Length = 611
Score = 26.2 bits (55), Expect = 9.1
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +3
Query: 288 PGILNGGEYRGFWVRWDSGIISAGREGEAIPFISWS 395
P + G ++ V W SG GEA+PF+ WS
Sbjct: 171 PRLALGKKWDEMTVTWTSGY----NIGEAVPFVEWS 202
>At3g08900.1 68416.m01036 reversibly glycosylated polypeptide-3
(RGP3) nearly identical to reversibly glycosylated
polypeptide-3 [Arabidopsis thaliana] GI:11863238;
contains non-consensus GA-donor splice site at intron 2
Length = 362
Score = 26.2 bits (55), Expect = 9.1
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -3
Query: 341 AIPTNPKTTIFPSVKNSGAFNFNLIGLGSFF 249
A+ T PK T+FP + AF+ LIG +F
Sbjct: 198 AVMTIPKGTLFPMCGMNLAFDRELIGPAMYF 228
>At3g02230.1 68416.m00204 reversibly glycosylated polypeptide-1
(RGP1) identical to reversibly glycosylated
polypeptide-1 (AtRGP) [Arabidopsis thaliana] GI:2317729
Length = 357
Score = 26.2 bits (55), Expect = 9.1
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -3
Query: 341 AIPTNPKTTIFPSVKNSGAFNFNLIGLGSFF 249
A+ T PK T+FP + AF+ LIG +F
Sbjct: 202 AVMTIPKGTLFPMCGMNLAFDRELIGPAMYF 232
>At2g13620.1 68415.m01501 cation/hydrogen exchanger, putative
(CHX15) monovalent cation:proton antiporter family 2
(CPA2) member, PMID:11500563
Length = 821
Score = 26.2 bits (55), Expect = 9.1
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = -3
Query: 254 FFLMTLLAFPQPPIITSYIGSDSCGPVVSAMWASFA 147
FF+ L F QP +I+ +G GP V FA
Sbjct: 53 FFVFILKPFRQPRVISEILGGIVLGPSVLGRSTKFA 88
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,026,613
Number of Sequences: 28952
Number of extensions: 197948
Number of successful extensions: 599
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 599
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 655255392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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