Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1162
         (652 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g03390.1 68417.m00461 leucine-rich repeat transmembrane prote...    29   2.7  
At3g02180.2 68416.m00193 expressed protein                             29   2.7  
At3g02180.1 68416.m00192 expressed protein                             29   2.7  
At5g06130.2 68418.m00682 chaperone protein dnaJ-related similar ...    29   3.5  
At1g53165.1 68414.m06023 protein kinase, putative similar to ser...    29   3.5  
At3g06400.1 68416.m00738 DNA-dependent ATPase, putative similar ...    28   6.2  

>At4g03390.1 68417.m00461 leucine-rich repeat transmembrane protein
           kinase, putative similar to Z. mays leucine-rich repeat
           transmembrane protein kinase LRRTPK 1, GenBank accession
           number AF023164
          Length = 776

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = +2

Query: 485 SFLNWSSSLPLVPCLQRQI*AV--LWVRLGDPLVPSWLSVLGDP 610
           S L W  S+ L       + A+  L+  LG P++P W++  GDP
Sbjct: 18  SLLIWIPSISLAATNPDDVAAINGLFAALGAPVLPGWIASGGDP 61


>At3g02180.2 68416.m00193 expressed protein
          Length = 122

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
 Frame = -2

Query: 636 SASSVGDTTGSPSTDSQDGTRGSPNLTQRTAQICLCKQ---GTRGRLELQFRKE 484
           +A+++G TT + +T + DGT G P +T  T  +   K+   G RG     FR E
Sbjct: 29  AAATMGTTTTTTTTTTTDGTGGRP-ITTTTTTVTDNKKTSAGVRGSPNNYFRSE 81


>At3g02180.1 68416.m00192 expressed protein
          Length = 122

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
 Frame = -2

Query: 636 SASSVGDTTGSPSTDSQDGTRGSPNLTQRTAQICLCKQ---GTRGRLELQFRKE 484
           +A+++G TT + +T + DGT G P +T  T  +   K+   G RG     FR E
Sbjct: 29  AAATMGTTTTTTTTTTTDGTGGRP-ITTTTTTVTDNKKTSAGVRGSPNNYFRSE 81


>At5g06130.2 68418.m00682 chaperone protein dnaJ-related similar to
           unknown protein (pir||T00468); contains Pfam PF00684 :
           DnaJ central domain (4 repeats)
          Length = 315

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 19/46 (41%), Positives = 26/46 (56%)
 Frame = +1

Query: 394 SVEPLRFLLILMKGGLSEAFLLKFRSSSTRFLPKLEFQSASRSLLA 531
           S  P R  L+L     S++ LL+F SS  +  P L F  +SRSLL+
Sbjct: 6   SATPHRHHLLLSSPSTSKS-LLRFPSSYLKPSPSLLFHGSSRSLLS 50


>At1g53165.1 68414.m06023 protein kinase, putative similar to
           serine/threonine protein kinase 24 [Homo sapiens]
           SWISS-PROT:Q9Y6E0
          Length = 1007

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
 Frame = -3

Query: 566 PTLPRGQLRFVFASKEREADWNSNLGRNRVELERNFSK-NASESPPFIRINKNLSGSTEN 390
           P  PR +L     S     D  SNL   ++ LE  F + NA E     ++NK    +T+N
Sbjct: 791 PRTPRSRLGLQERSSSASEDSISNLAEAKLALEAGFRRGNARERLGNGKVNKRREQATDN 850


>At3g06400.1 68416.m00738 DNA-dependent ATPase, putative similar to
            DNA-dependent ATPase SNF2H [Mus musculus] GI:14028669;
            contains Pfam profiles PF00271: Helicase conserved
            C-terminal domain, PF00176: SNF2 family N-terminal
            domain, PF00249: Myb-like DNA-binding domain
          Length = 1055

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -3

Query: 533  FASKEREADWNSNLGRNRVELERNFSKNASESPPFIRINKNLS 405
            F  +ER+A     L ++    +R   + ASESP   +  K+LS
Sbjct: 1011 FDERERQARKEKKLAKSATPSKRPLGRQASESPSSTKKRKHLS 1053


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,551,115
Number of Sequences: 28952
Number of extensions: 271269
Number of successful extensions: 723
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 701
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 723
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)