Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1161
         (538 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37094| Best HMM Match : PH (HMM E-Value=0.0005)                     34   0.064
SB_4927| Best HMM Match : DUF590 (HMM E-Value=0)                       34   0.064
SB_48403| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.3  
SB_30230| Best HMM Match : CH (HMM E-Value=0.0035)                     27   7.3  
SB_11738| Best HMM Match : SH3_2 (HMM E-Value=3.7e-32)                 27   7.3  
SB_46656| Best HMM Match : A2M (HMM E-Value=5.8e-39)                   27   9.7  
SB_24795| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  

>SB_37094| Best HMM Match : PH (HMM E-Value=0.0005)
          Length = 1007

 Score = 34.3 bits (75), Expect = 0.064
 Identities = 24/73 (32%), Positives = 34/73 (46%)
 Frame = -1

Query: 523 REAELNSQFRKEPGLSSSGNFSKNASESPPFIRINIDLSGSDGESADFQCQKIRRENKWV 344
           REAE NS   KEP L     +SK+       I I ++ +GS+ E +   C +        
Sbjct: 377 REAEGNSYGEKEPLLDEDAIYSKHEMLEALAIEIELEKTGSEAEVSGSLCFRDGARIIDY 436

Query: 343 INSYYLPIDLKIL 305
           I +Y  PID + L
Sbjct: 437 ILAYETPIDTESL 449


>SB_4927| Best HMM Match : DUF590 (HMM E-Value=0)
          Length = 936

 Score = 34.3 bits (75), Expect = 0.064
 Identities = 24/73 (32%), Positives = 34/73 (46%)
 Frame = -1

Query: 523 REAELNSQFRKEPGLSSSGNFSKNASESPPFIRINIDLSGSDGESADFQCQKIRRENKWV 344
           REAE NS   KEP L     +SK+       I I ++ +GS+ E +   C +        
Sbjct: 24  REAEGNSYGEKEPLLDEDAIYSKHEMLEALAIEIELEKTGSEAEVSGSLCFRDGARIIDY 83

Query: 343 INSYYLPIDLKIL 305
           I +Y  PID + L
Sbjct: 84  ILAYETPIDTESL 96


>SB_48403| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 347

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = -1

Query: 412 LSGSDGESADFQCQKIRRENKWVINSYYL 326
           L GS  +S + Q Q IRR  K +I+S+Y+
Sbjct: 228 LEGSASDSPNTQPQSIRRYKKSLISSFYV 256


>SB_30230| Best HMM Match : CH (HMM E-Value=0.0035)
          Length = 2440

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -1

Query: 412  LSGSDGESADFQCQKIRRENKWVINSYYLPID 317
            LS S+   +  Q ++IRR+ KW  NS   P+D
Sbjct: 2347 LSKSEKSMSPRQLRRIRRQAKWGANSQQGPLD 2378


>SB_11738| Best HMM Match : SH3_2 (HMM E-Value=3.7e-32)
          Length = 2436

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +3

Query: 354  FSRRIF*HWKSADSPSEPLRSILILMKGGL 443
            F+R +  +WK+ D PSE +R   + + G +
Sbjct: 1125 FTRSVLLNWKAPDLPSEEIRGYGVYVNGDM 1154


>SB_46656| Best HMM Match : A2M (HMM E-Value=5.8e-39)
          Length = 319

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 16/47 (34%), Positives = 27/47 (57%)
 Frame = -1

Query: 232 RSKRVSKFIILLKLFHPYVSGCNTSRSQTADSSYFDVIYRGARLICV 92
           R +RVS   +++ +F+ Y+S C T R   A S +F++     R +CV
Sbjct: 154 RGERVS---VIVSVFN-YLSQCLTIRINLAKSDFFELHSADNRSVCV 196


>SB_24795| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 165

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 17/34 (50%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
 Frame = -1

Query: 211 FIILLKLFHPYVSG---CNTSRSQTADSSYFDVI 119
           FI  +KL   YVSG   C+T  SQT  + YF VI
Sbjct: 89  FIAAIKL--SYVSGHITCDTQESQTRTNQYFIVI 120


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,086,504
Number of Sequences: 59808
Number of extensions: 285666
Number of successful extensions: 517
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 502
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 517
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1215643300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)