Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1161
         (538 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g31870.1 68414.m03917 expressed protein                             28   3.4  
At1g27440.1 68414.m03345 exostosin family protein contains Pfam ...    27   7.9  

>At1g31870.1 68414.m03917 expressed protein
          Length = 561

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 18/52 (34%), Positives = 24/52 (46%)
 Frame = -1

Query: 490 EPGLSSSGNFSKNASESPPFIRINIDLSGSDGESADFQCQKIRRENKWVINS 335
           EP   SS +F  NA  SPP   IN+  S     S   +   +RR ++ V  S
Sbjct: 270 EPARRSSKSFGSNADLSPPGRNINMKDSQDSDLSPQRKAADLRRSSENVSRS 321


>At1g27440.1 68414.m03345 exostosin family protein contains Pfam
           profile: PF03016 exostosin family
          Length = 412

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -2

Query: 90  PTEVSNSIFMFMHCLFYDIN 31
           P ++  SIF++   LFYD+N
Sbjct: 213 PPDIPRSIFVYFRGLFYDVN 232


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,619,213
Number of Sequences: 28952
Number of extensions: 199710
Number of successful extensions: 435
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 435
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 993966856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)