Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1141
         (444 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g38280.1 68418.m04615 serine/threonine protein kinase (PR5K) ...    28   2.5  
At4g39330.1 68417.m05568 mannitol dehydrogenase, putative nearly...    28   2.5  
At1g55700.1 68414.m06378 DC1 domain-containing protein contains ...    28   2.5  
At5g38970.2 68418.m04712 cytochrome P450, putative similar to Cy...    27   5.7  
At5g38970.1 68418.m04713 cytochrome P450, putative similar to Cy...    27   5.7  
At5g04150.1 68418.m00403 basic helix-loop-helix (bHLH) family pr...    27   7.5  
At3g05030.1 68416.m00546 sodium proton exchanger, putative (NHX2...    27   7.5  
At2g28490.1 68415.m03462 cupin family protein similar to preproM...    27   7.5  
At4g31230.1 68417.m04433 protein kinase family protein contains ...    26   10.0 
At3g24340.1 68416.m03056 SNF2 domain-containing protein / helica...    26   10.0 
At3g05200.1 68416.m00567 zinc finger (C3HC4-type RING finger) fa...    26   10.0 
At1g79310.1 68414.m09243 latex-abundant protein, putative (AMC4)...    26   10.0 
At1g56400.1 68414.m06486 F-box family protein contains Pfam:PF00...    26   10.0 
At1g24460.1 68414.m03081 myosin-related contains TIGRFAM TIGR016...    26   10.0 

>At5g38280.1 68418.m04615 serine/threonine protein kinase (PR5K)
           identical to receptor serine/threonine kinase PR5K
           gi|1235680|gb|AAC49208
          Length = 665

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = -2

Query: 230 CRSFRGGTNKNSRC--RYGY*KDRCTADSR*TNTPNNSLVHCPSRIAQEAKRAQET 69
           C+     TN  + C   Y Y  D      R +N+PN  +  CP+ I+  ++ ++ET
Sbjct: 208 CQPTLYSTNFKNECPLAYSYAYDNENNTFRCSNSPNYVITFCPNDISSMSQPSKET 263


>At4g39330.1 68417.m05568 mannitol dehydrogenase, putative nearly
           identical to SP|P42734, probable mannitol dehydrogenase
          Length = 360

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = -1

Query: 192 VSIRILKGSLHSGFTLDEHAQQFTGSLSFTNSARSKTGTRN 70
           V + ++ GS  S  + D+  + +   +SFT +A    GT+N
Sbjct: 94  VGVGVISGSCQSCESCDQDLENYCPQMSFTYNAIGSDGTKN 134


>At1g55700.1 68414.m06378 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 679

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 364 CPTSRNEANEVNLFCQTCDYD 426
           C T ++   + +L C TCDYD
Sbjct: 43  CRTKKHHRTKYHLHCDTCDYD 63


>At5g38970.2 68418.m04712 cytochrome P450, putative similar to
           Cytochrome P450 85 (SP:Q43147) {Lycopersicon
           esculentum};
          Length = 384

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 16/57 (28%), Positives = 23/57 (40%)
 Frame = -2

Query: 377 LEVGQPTSKSSWRFQVQPRLTTNSPSMYFFSFLHTDFEAVKKER*LQHSCRSFRGGT 207
           LE+        WR  V  R      ++Y    +   +  +KK    Q+SC  F GGT
Sbjct: 275 LEINGYLIPKGWRIYVYTREINYDANLYEDPLIFNPWRWMKKSLESQNSCFVFGGGT 331


>At5g38970.1 68418.m04713 cytochrome P450, putative similar to
           Cytochrome P450 85 (SP:Q43147) {Lycopersicon
           esculentum};
          Length = 465

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 16/57 (28%), Positives = 23/57 (40%)
 Frame = -2

Query: 377 LEVGQPTSKSSWRFQVQPRLTTNSPSMYFFSFLHTDFEAVKKER*LQHSCRSFRGGT 207
           LE+        WR  V  R      ++Y    +   +  +KK    Q+SC  F GGT
Sbjct: 356 LEINGYLIPKGWRIYVYTREINYDANLYEDPLIFNPWRWMKKSLESQNSCFVFGGGT 412


>At5g04150.1 68418.m00403 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain; PMID: 12679534
          Length = 240

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = -2

Query: 332 VQPRLTTNSPSMYFFSFLHTDFEAVKKER*LQHSCRSFRGGTNKNS 195
           +Q ++ + SP+++F SFLH   ++      L H   S    TN N+
Sbjct: 6   LQSQVHSFSPTLHFPSFLHPLDDSKSHNINLHHMSLSHSNNTNSNN 51


>At3g05030.1 68416.m00546 sodium proton exchanger, putative (NHX2)
           similar to sodium proton exchanger Nhx1 GB:AAD16946
           [Arabidopsis thaliana]; Member of The Monovalent
           Cation:Proton Antiporter (CPA1) Family, PMID:11500563
          Length = 546

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
 Frame = -3

Query: 271 TSKLSKRKGSSSILVAVFEAEQI---RIPGVDTDIKRIVAQRIHVRRTRPTIHWF 116
           TS LS      SI + + + EQ+    +PG   D+ R  + R  + R   T+H++
Sbjct: 455 TSMLSDDSTPKSIHIPLLDGEQLDSFELPGSHQDVPRPNSLRGFLMRPTRTVHYY 509


>At2g28490.1 68415.m03462 cupin family protein similar to
           preproMP27-MP32 [Cucurbita cv. Kurokawa Amakuri]
           GI:691752, allergen Gly m Bd 28K [Glycine max]
           GI:12697782, vicilin [Matteuccia struthiopteris]
           GI:1019792; contains Pfam profile PF00190: Cupin
          Length = 511

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = -1

Query: 444 SGSVASVVVTGLTEEIHFVCFVSGSRATDFEVILAF 337
           +GSV  +  TGL + +H +C +  +++  FE    F
Sbjct: 173 AGSVFYLHNTGLGQRLHVICSIDPTQSLGFETFQPF 208


>At4g31230.1 68417.m04433 protein kinase family protein contains
           Pfam profiles PF00069: Protein kinase domain, PF00582:
           universal stress protein family
          Length = 764

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -2

Query: 404 KRFTSFASFLEVGQPTSKSSWRFQVQPRLTTNSPSMY 294
           KR  +  S+ E+  P S+ S+    +P +  NSPS+Y
Sbjct: 240 KRGLTGRSYGELSIPDSEISFNSSGRPSIERNSPSLY 276


>At3g24340.1 68416.m03056 SNF2 domain-containing protein / helicase
           domain-containing protein similar to SP|P41410 DNA
           repair protein rhp54 (RAD54 homolog)
           {Schizosaccharomyces pombe}; contains PFam profiles
           PF00271: Helicase conserved C-terminal domain, PF00176:
           SNF2 family N-terminal domain
          Length = 1132

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +1

Query: 283 KEKKYIDGELVVSRGCTWKRQDDFEVGCPTSRNEANEVNL 402
           + + Y++  L  S+G + + +D   +GC  SR E   VN+
Sbjct: 14  RTESYLNSILNKSKGISGEEEDQ-SLGCVNSRTEKRRVNM 52


>At3g05200.1 68416.m00567 zinc finger (C3HC4-type RING finger)
           family protein (ATL6) contains Pfam profile: PF00097:
           Zinc finger, C3HC4 type (RING finger)
          Length = 398

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 217 EAEQIRIPGVDTDIKRIVAQRIH 149
           E +  R+PGV  D+KR+   R H
Sbjct: 217 EVDSRRLPGVPVDLKRVKFSRSH 239


>At1g79310.1 68414.m09243 latex-abundant protein, putative (AMC4) /
           caspase family protein similar to latex-abundant protein
           [Hevea brasiliensis] gb:AAD13216; contains Pfam profile
           PF00656: ICE-like protease (caspase) p20 domain
          Length = 403

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 15/53 (28%), Positives = 24/53 (45%)
 Frame = -1

Query: 186 IRILKGSLHSGFTLDEHAQQFTGSLSFTNSARSKTGTRNDSFAIMMHNKLTRL 28
           I I+  S HSG  +DE  +Q   S +   +  SK  +    F   +H+   +L
Sbjct: 132 ITIVSDSCHSGGLIDEAKEQIGESTTTKPNRESKVSSFEFEFKNCLHSIFVKL 184


>At1g56400.1 68414.m06486 F-box family protein contains Pfam:PF00646
           F-box domain
          Length = 479

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = -3

Query: 298 CISFLSCIQTSKLSKR 251
           C+SF  CI+TS L+KR
Sbjct: 29  CLSFKECIRTSVLAKR 44


>At1g24460.1 68414.m03081 myosin-related contains TIGRFAM TIGR01612:
            reticulocyte binding protein; similar to  Myosin heavy
            chain, non-muscle (Zipper protein) (Myosin II)
            (SP:Q99323) {Drosophila melanogaster} similar to EST
            gb|T76116
          Length = 1730

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 7/26 (26%), Positives = 18/26 (69%)
 Frame = -2

Query: 371  VGQPTSKSSWRFQVQPRLTTNSPSMY 294
            + +P+S  +WR+ +Q  + + +PS++
Sbjct: 1697 IDEPSSSKAWRYGIQSLIASVAPSLH 1722


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,294,394
Number of Sequences: 28952
Number of extensions: 183389
Number of successful extensions: 568
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 568
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 712739520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)