Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2492
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    24   1.8  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.1  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    22   5.3  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    22   5.3  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    21   9.3  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    21   9.3  

>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 15/33 (45%), Positives = 17/33 (51%)
 Frame = +3

Query: 108 SSLSVNTIV*EHYWSPFIKNNLNNCINVYTRNN 206
           SSLS  TI   H  + +  NN NN  N Y  NN
Sbjct: 316 SSLSNKTI---HNNNNYNNNNYNNNYNNYNNNN 345


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 10/44 (22%), Positives = 23/44 (52%)
 Frame = +3

Query: 495  WNLKYSATYVLCLLKDXGVKPQETVGGSISVIASASPNRPPTNL 626
            +NL+ + TY L ++ +  +   +       + A  +P+ PPT++
Sbjct: 940  FNLRPATTYHLRIVAENEIGASDPSDTVTIITAEEAPSGPPTSI 983


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +3

Query: 108 SSLSVNTIV*EHYWSPFIKNNLNN 179
           SSLS NTI   +Y   +  NN NN
Sbjct: 82  SSLSNNTIHNNNYKYNYNNNNYNN 105


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +3

Query: 108 SSLSVNTIV*EHYWSPFIKNNLNN 179
           SSLS NTI   +Y   +  NN NN
Sbjct: 82  SSLSNNTIHNNNYKYNYNNNNYNN 105


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +2

Query: 362 SDGSRGANNRSDKNARSRPRH 424
           S GSR  +N  +KN R+  R+
Sbjct: 46  SQGSRTTHNELEKNRRAHLRN 66


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +1

Query: 25  ELLLLER-PNEPARARYNEDMQYVCHGSL 108
           ++LLLE  P+EPA A    ++Q    G L
Sbjct: 94  KVLLLEAGPDEPAGAEIPSNLQLYLGGDL 122


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 215,448
Number of Sequences: 438
Number of extensions: 5134
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)