Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2484
         (650 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    25   0.63 
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    25   0.63 
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    25   0.63 
DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein ...    24   1.1  
AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein ...    24   1.1  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          22   4.5  

>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 25.0 bits (52), Expect = 0.63
 Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = -3

Query: 627 SKHYYKLWLCLQVIKNIP-XFSF*IF 553
           +KHY + W  L +I +IP  + F IF
Sbjct: 161 AKHYLRTWFFLDLISSIPLDYIFLIF 186


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 25.0 bits (52), Expect = 0.63
 Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = -3

Query: 627 SKHYYKLWLCLQVIKNIP-XFSF*IF 553
           +KHY + W  L +I +IP  + F IF
Sbjct: 161 AKHYLRTWFFLDLISSIPLDYIFLIF 186


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 25.0 bits (52), Expect = 0.63
 Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = -3

Query: 627 SKHYYKLWLCLQVIKNIP-XFSF*IF 553
           +KHY + W  L +I +IP  + F IF
Sbjct: 161 AKHYLRTWFFLDLISSIPLDYIFLIF 186


>DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein 4
           protein.
          Length = 128

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +1

Query: 463 CYPCRFAS*KLSHSTLQWDNSNRVMVWVLKE 555
           C PC     K++   +Q+   N+  +WVL E
Sbjct: 75  CSPCSEKQKKIADKVVQFLIDNKPEIWVLLE 105


>AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein
           protein.
          Length = 128

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +1

Query: 463 CYPCRFAS*KLSHSTLQWDNSNRVMVWVLKE 555
           C PC     K++   +Q+   N+  +WVL E
Sbjct: 75  CSPCSEKQKKIADKVVQFLIDNKPEIWVLLE 105


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 319 QTSLVRDEGKPQGRGRSRSSLLIQTH 242
           +TS  R   + +GRGRSR   +I +H
Sbjct: 309 ETSRERSRDR-RGRGRSREHRIIPSH 333


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,064
Number of Sequences: 438
Number of extensions: 3401
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)