Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2482
         (650 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    25   0.84 
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   4.5  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   5.9  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    22   5.9  
AY526235-1|AAS20468.1|  169|Apis mellifera esterase protein.           22   5.9  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    22   5.9  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           22   5.9  

>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 24.6 bits (51), Expect = 0.84
 Identities = 22/66 (33%), Positives = 26/66 (39%)
 Frame = +3

Query: 108 SHSNLYGQINYLNTKQKKRNCVRN*IKKLKNSFYL*RRLQIKLNKICYNGNICSLGDNPH 287
           S SN Y   NY N      N   N  KKL    Y+    QI +    Y GN       P 
Sbjct: 317 SLSNNYKYSNYNNYNNYNNNNYNNYNKKLYYKNYIINIEQIPVPVPIYCGNFPPRPMGP- 375

Query: 288 KWISME 305
            WIS++
Sbjct: 376 -WISIQ 380


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -3

Query: 537 KIMWRQAKTCIPRIK 493
           K+ WR A  CI RI+
Sbjct: 117 KLAWRNATRCIGRIQ 131


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -3

Query: 507 IPRIKKNTFLILLKFSTIEL 448
           I RI+ N FL L    T+EL
Sbjct: 371 IDRIESNAFLPLYNLHTLEL 390


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -1

Query: 275 PQRANVAIVTNFVQFYL*P 219
           P RA V  + NF++FY  P
Sbjct: 277 PARAIVETLANFMRFYYNP 295


>AY526235-1|AAS20468.1|  169|Apis mellifera esterase protein.
          Length = 169

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -1

Query: 275 PQRANVAIVTNFVQFYL*P 219
           P RA V  + NF++FY  P
Sbjct: 148 PARAIVETLANFMRFYYNP 166


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 282 GCPPKSKCCHCNKFCSILFVAS 217
           G   K +  HC +  SILFV+S
Sbjct: 373 GLEMKGQMVHCPESDSILFVSS 394


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -1

Query: 275 PQRANVAIVTNFVQFYL*P 219
           P RA V  + NF++FY  P
Sbjct: 277 PARAIVETLANFMRFYYNP 295


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,041
Number of Sequences: 438
Number of extensions: 3960
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)