Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2474
         (700 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    24   1.6  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    22   6.4  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      22   6.4  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    22   6.4  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    21   8.5  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   8.5  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   8.5  

>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -3

Query: 557 GATPRGVTPXTTSTGSMTLPSDLDIFRP 474
           GATPR   P  ++T       DLDI  P
Sbjct: 223 GATPRKAPPQLSTTDKKGSAIDLDIGPP 250


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +1

Query: 109 YKVSLPAAHQHKEEELW 159
           Y  S P  ++ +EE+LW
Sbjct: 23  YSASYPPQNRSQEEDLW 39


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -3

Query: 572 SLPVGGATPRGVTPXTTS 519
           S P GG+ P  VTP  T+
Sbjct: 149 SFPRGGSLPTPVTPTPTT 166


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 8/33 (24%), Positives = 17/33 (51%)
 Frame = -1

Query: 205 SRRLWLKLPLACDQIPIILLLYADEQRAVRLCT 107
           ++RLWL   +     P + +L++D      +C+
Sbjct: 473 AKRLWLGETIEAKTYPEVTMLFSDIVGFTEICS 505


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = +1

Query: 340 PGTLLETGHDI-LFFWVARMVFFGQRLMGKLPF 435
           P  +L  GHDI   +W   ++ F + L G  PF
Sbjct: 534 PEVILNKGHDISADYWSLGVLMF-ELLTGTPPF 565


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +1

Query: 136  QHKEEELWVSGHTQ 177
            QH E + WV+G T+
Sbjct: 1281 QHVEYQFWVTGSTR 1294


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +1

Query: 136  QHKEEELWVSGHTQ 177
            QH E + WV+G T+
Sbjct: 1277 QHVEYQFWVTGSTR 1290


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,561
Number of Sequences: 438
Number of extensions: 4219
Number of successful extensions: 14
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)