Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-2468
(700 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB231585-1|BAE17127.1| 898|Apis mellifera Mahya protein. 50 2e-08
AB267886-1|BAF46356.1| 567|Apis mellifera ecdysteroid receptor ... 27 0.13
AB095514-1|BAC76336.1| 72|Apis mellifera ecdyson receptor prot... 27 0.13
DQ869053-1|ABJ09600.1| 459|Apis mellifera capa-like receptor pr... 23 2.8
AY921579-1|AAX14899.1| 996|Apis mellifera ephrin receptor protein. 23 2.8
AY569698-1|AAS86651.1| 407|Apis mellifera complementary sex det... 23 3.7
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein. 23 3.7
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. 22 6.4
AB181702-1|BAE06051.1| 628|Apis mellifera acetylcholinesterase ... 22 6.4
DQ384991-1|ABD51779.1| 94|Apis mellifera allergen Api m 6 vari... 21 8.5
DQ384990-1|ABD51778.1| 92|Apis mellifera allergen Api m 6 vari... 21 8.5
AY569710-1|AAS86663.1| 408|Apis mellifera complementary sex det... 21 8.5
AY569709-1|AAS86662.1| 408|Apis mellifera complementary sex det... 21 8.5
AY569708-1|AAS86661.1| 408|Apis mellifera complementary sex det... 21 8.5
AY569706-1|AAS86659.1| 397|Apis mellifera complementary sex det... 21 8.5
>AB231585-1|BAE17127.1| 898|Apis mellifera Mahya protein.
Length = 898
Score = 50.4 bits (115), Expect = 2e-08
Identities = 25/64 (39%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Frame = +2
Query: 227 DPCTSVTCPTGARCVSTYGQ--AECRCPRSCQRR-KPVCGTDGKEYLSTCHLDKHACDNQ 397
DPC S C G C + A C C R C RR +PVC ++GK Y + C L + AC +
Sbjct: 80 DPCASKYCGIGKECELSPNSTIAVCVCMRKCPRRHRPVCASNGKIYANHCELHRAACHSG 139
Query: 398 LNVT 409
++T
Sbjct: 140 SSLT 143
Score = 39.1 bits (87), Expect = 4e-05
Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Frame = +2
Query: 431 DPCSEHECADGGVCQLNEVRS-PTCRCGPSCDLIVRPGSAVCGSDYKDYPSECPLRXESC 607
DPC+ C G C+L+ + C C C RP VC S+ K Y + C L +C
Sbjct: 80 DPCASKYCGIGKECELSPNSTIAVCVCMRKCPRRHRP---VCASNGKIYANHCELHRAAC 136
Query: 608 RTKQQLT 628
+ LT
Sbjct: 137 HSGSSLT 143
Score = 25.8 bits (54), Expect = 0.40
Identities = 15/57 (26%), Positives = 20/57 (35%), Gaps = 1/57 (1%)
Frame = +2
Query: 8 EACEKTFCRWGAEC-VSLGDGRAHXXXXXXXXXXXXXXXXXAGRTYRNHCYLRKEAC 175
+ C +C G EC +S A G+ Y NHC L + AC
Sbjct: 80 DPCASKYCGIGKECELSPNSTIAVCVCMRKCPRRHRPVCASNGKIYANHCELHRAAC 136
>AB267886-1|BAF46356.1| 567|Apis mellifera ecdysteroid receptor A
isoform protein.
Length = 567
Score = 27.5 bits (58), Expect = 0.13
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = +2
Query: 593 RXESCRTKQQLTIAYRGECXLXQHPC 670
+ + CR K+ LT+ R EC + ++ C
Sbjct: 238 KCQECRLKKCLTVGMRPECVVPEYQC 263
Score = 23.4 bits (48), Expect = 2.1
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +3
Query: 48 VCPWGTVEPIAPVLQPVQHQL 110
V P+G V+PI+P + + H+L
Sbjct: 322 VSPYGYVKPISPEQEELIHRL 342
>AB095514-1|BAC76336.1| 72|Apis mellifera ecdyson receptor
protein.
Length = 72
Score = 27.5 bits (58), Expect = 0.13
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = +2
Query: 593 RXESCRTKQQLTIAYRGECXLXQHPC 670
+ + CR K+ LT+ R EC + ++ C
Sbjct: 35 KCQECRLKKCLTVGMRPECMVPEYQC 60
>DQ869053-1|ABJ09600.1| 459|Apis mellifera capa-like receptor
protein.
Length = 459
Score = 23.0 bits (47), Expect = 2.8
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = +2
Query: 497 TCRCGPSCDLIVRPG 541
TCRC PS I R G
Sbjct: 330 TCRCSPSNPSITRTG 344
>AY921579-1|AAX14899.1| 996|Apis mellifera ephrin receptor protein.
Length = 996
Score = 23.0 bits (47), Expect = 2.8
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = +2
Query: 158 LRKEACERRLNLRIKHEGECEAGDPCTSVTCPTGARCVSTYGQAECRC 301
+ K+ C + KHE + C + CP ++ S YG ECRC
Sbjct: 257 VEKQECTECPIGKFKHEAGSHS---CEA--CPAHSKS-SDYGFTECRC 298
>AY569698-1|AAS86651.1| 407|Apis mellifera complementary sex
determiner protein.
Length = 407
Score = 22.6 bits (46), Expect = 3.7
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = -2
Query: 555 PHTAEPGRTIKSQDGPHRQVGDLTSFS*QTPPSAH 451
P P +I+ Q R +G TSF PP+A+
Sbjct: 359 PRPMGPWISIQEQIPRFRHIGPSTSFPRFIPPNAY 393
>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
Length = 1598
Score = 22.6 bits (46), Expect = 3.7
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +3
Query: 345 ARSICPHVISTSMPATIN*T*LSNTMENA 431
+R + P STS+PATI T + T A
Sbjct: 91 SRPLHPPASSTSLPATITTTTTTTTTTTA 119
Score = 21.4 bits (43), Expect = 8.5
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +1
Query: 403 RDYQIPWKMRSMFGARMRRWRSLSAE*SQ 489
+DY+IP MR + R +S++ + SQ
Sbjct: 780 QDYRIPEVMRRLMSEDKRLSKSVNGDQSQ 808
>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
Length = 1946
Score = 21.8 bits (44), Expect = 6.4
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = +2
Query: 188 NLRIKHEGECEAGDPCTSVTCPTGARCVS 274
+LRI E E A DP +VT T S
Sbjct: 949 HLRIVAENEIGASDPSDTVTIITAEEAPS 977
>AB181702-1|BAE06051.1| 628|Apis mellifera acetylcholinesterase
protein.
Length = 628
Score = 21.8 bits (44), Expect = 6.4
Identities = 7/13 (53%), Positives = 8/13 (61%)
Frame = +1
Query: 316 KTKTCLWDRWQGV 354
+T T LW W GV
Sbjct: 482 RTSTNLWGEWMGV 494
>DQ384991-1|ABD51779.1| 94|Apis mellifera allergen Api m 6 variant
2 precursor protein.
Length = 94
Score = 21.4 bits (43), Expect = 8.5
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +2
Query: 452 CADGGVCQLNEVRSPTCRCGP 514
CA G VC+L +R+ C P
Sbjct: 67 CAPGCVCRLGYLRNKKKVCVP 87
>DQ384990-1|ABD51778.1| 92|Apis mellifera allergen Api m 6 variant
1 precursor protein.
Length = 92
Score = 21.4 bits (43), Expect = 8.5
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +2
Query: 452 CADGGVCQLNEVRSPTCRCGP 514
CA G VC+L +R+ C P
Sbjct: 67 CAPGCVCRLGYLRNKKKVCVP 87
>AY569710-1|AAS86663.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 21.4 bits (43), Expect = 8.5
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = -2
Query: 555 PHTAEPGRTIKSQDGPHRQVGDLTSFS*QTPPSAH 451
P P +I+ Q R +G TSF PP+A+
Sbjct: 359 PRPMGPFVSIQEQIPRFRYIGPPTSFPRFIPPNAY 393
>AY569709-1|AAS86662.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 21.4 bits (43), Expect = 8.5
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = -2
Query: 555 PHTAEPGRTIKSQDGPHRQVGDLTSFS*QTPPSAH 451
P P +I+ Q R +G TSF PP+A+
Sbjct: 359 PRPMGPFVSIQEQIPRFRYIGPPTSFPRFIPPNAY 393
>AY569708-1|AAS86661.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 21.4 bits (43), Expect = 8.5
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = -2
Query: 555 PHTAEPGRTIKSQDGPHRQVGDLTSFS*QTPPSAH 451
P P +I+ Q R +G TSF PP+A+
Sbjct: 359 PRPMGPFVSIQEQIPRFRYIGPPTSFPRFIPPNAY 393
>AY569706-1|AAS86659.1| 397|Apis mellifera complementary sex
determiner protein.
Length = 397
Score = 21.4 bits (43), Expect = 8.5
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = -2
Query: 555 PHTAEPGRTIKSQDGPHRQVGDLTSFS*QTPPSAH 451
P P +I+ Q R +G TSF PP+A+
Sbjct: 348 PRPMGPFVSIQEQIPRFRYIGPPTSFPRFIPPNAY 382
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,187
Number of Sequences: 438
Number of extensions: 4419
Number of successful extensions: 23
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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