Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-2458
(650 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF591128-1|ABQ59246.1| 684|Apis mellifera hexamerin 70a protein. 27 0.21
EF625897-1|ABR45904.1| 684|Apis mellifera hexamerin protein. 25 0.63
AF498306-5|AAM19330.1| 456|Apis mellifera dopamine receptor typ... 24 1.5
AY268031-1|AAP23056.1| 810|Apis mellifera dorsal protein splice... 23 2.6
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 22 4.5
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 21 7.8
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 21 7.8
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 21 7.8
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 21 7.8
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 21 7.8
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 21 7.8
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 21 7.8
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 21 7.8
>EF591128-1|ABQ59246.1| 684|Apis mellifera hexamerin 70a protein.
Length = 684
Score = 26.6 bits (56), Expect = 0.21
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -1
Query: 263 ILFTIEDINPNQVXFSVXRAFRFWM 189
+++ IEDI N F + +AF FW+
Sbjct: 220 LIYFIEDIGLNTYYFFLRQAFPFWL 244
>EF625897-1|ABR45904.1| 684|Apis mellifera hexamerin protein.
Length = 684
Score = 25.0 bits (52), Expect = 0.63
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -1
Query: 257 FTIEDINPNQVXFSVXRAFRFWM 189
+ IEDI N F + +AF FW+
Sbjct: 222 YFIEDIGLNTYYFFLRQAFPFWL 244
>AF498306-5|AAM19330.1| 456|Apis mellifera dopamine receptor type
D2 protein.
Length = 456
Score = 23.8 bits (49), Expect = 1.5
Identities = 9/21 (42%), Positives = 11/21 (52%)
Frame = -1
Query: 125 PNIAWGRWLRPRSMPVSKCVF 63
P I W R +R +P KC F
Sbjct: 180 PAIVWWRAVRTEEVPEDKCPF 200
>AY268031-1|AAP23056.1| 810|Apis mellifera dorsal protein splice
variant B protein.
Length = 810
Score = 23.0 bits (47), Expect = 2.6
Identities = 7/12 (58%), Positives = 10/12 (83%)
Frame = +3
Query: 240 DIFNGKKYEDIC 275
D+ N +KYED+C
Sbjct: 597 DLSNERKYEDVC 608
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 22.2 bits (45), Expect = 4.5
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = -3
Query: 204 FPVLDVDISTILHGR 160
FPVL V I+ +LHG+
Sbjct: 8 FPVLFVIINVLLHGQ 22
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 21.4 bits (43), Expect = 7.8
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -2
Query: 430 RNCVPRSPSGILRSSRRSPLSAIR 359
+N PSG +RS+ +P+S R
Sbjct: 355 KNSAANPPSGYIRSAFGTPISTGR 378
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 21.4 bits (43), Expect = 7.8
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -2
Query: 430 RNCVPRSPSGILRSSRRSPLSAIR 359
+N PSG +RS+ +P+S R
Sbjct: 355 KNSAANPPSGYIRSAFGTPISTGR 378
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 21.4 bits (43), Expect = 7.8
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -2
Query: 430 RNCVPRSPSGILRSSRRSPLSAIR 359
+N PSG +RS+ +P+S R
Sbjct: 355 KNSAANPPSGYIRSAFGTPISTGR 378
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 21.4 bits (43), Expect = 7.8
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -2
Query: 430 RNCVPRSPSGILRSSRRSPLSAIR 359
+N PSG +RS+ +P+S R
Sbjct: 355 KNSAANPPSGYIRSAFGTPISTGR 378
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 21.4 bits (43), Expect = 7.8
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -2
Query: 430 RNCVPRSPSGILRSSRRSPLSAIR 359
+N PSG +RS+ +P+S R
Sbjct: 355 KNSAANPPSGYIRSAFGTPISTGR 378
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 21.4 bits (43), Expect = 7.8
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -2
Query: 430 RNCVPRSPSGILRSSRRSPLSAIR 359
+N PSG +RS+ +P+S R
Sbjct: 355 KNSAANPPSGYIRSAFGTPISTGR 378
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.4 bits (43), Expect = 7.8
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -2
Query: 430 RNCVPRSPSGILRSSRRSPLSAIR 359
+N PSG +RS+ +P+S R
Sbjct: 423 KNSAANPPSGYIRSAFGTPISTGR 446
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.4 bits (43), Expect = 7.8
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -2
Query: 430 RNCVPRSPSGILRSSRRSPLSAIR 359
+N PSG +RS+ +P+S R
Sbjct: 423 KNSAANPPSGYIRSAFGTPISTGR 446
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,891
Number of Sequences: 438
Number of extensions: 3901
Number of successful extensions: 16
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -