Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2457
         (700 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    24   1.2  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    24   1.2  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    24   1.2  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    23   2.1  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    23   2.1  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    21   8.5  

>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 7/27 (25%), Positives = 17/27 (62%)
 Frame = +2

Query: 173 RNEANRQRLVRYLRLSYSYRNNTFEKM 253
           R ++   +++  L  +Y+Y NN ++K+
Sbjct: 73  REKSKEHKIISSLSNNYNYNNNNYKKL 99


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 7/27 (25%), Positives = 17/27 (62%)
 Frame = +2

Query: 173 RNEANRQRLVRYLRLSYSYRNNTFEKM 253
           R ++   +++  L  +Y+Y NN ++K+
Sbjct: 73  REKSKEHKIISSLSNNYNYNNNNYKKL 99


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 7/27 (25%), Positives = 17/27 (62%)
 Frame = +2

Query: 173 RNEANRQRLVRYLRLSYSYRNNTFEKM 253
           R ++   +++  L  +Y+Y NN ++K+
Sbjct: 73  REKSKEHKIISSLSNNYNYNNNNYKKL 99


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +2

Query: 488 LKLV*NHWTGCLKF 529
           + L+  HW+GCL+F
Sbjct: 285 MMLLIGHWSGCLQF 298


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +2

Query: 488 LKLV*NHWTGCLKF 529
           + L+  HW+GCL+F
Sbjct: 253 MMLLIGHWSGCLQF 266


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 6/25 (24%), Positives = 15/25 (60%)
 Frame = +2

Query: 173 RNEANRQRLVRYLRLSYSYRNNTFE 247
           R  +  ++++  L  +Y+Y NN ++
Sbjct: 306 RERSKERKIISSLSNNYNYNNNNYK 330


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,590
Number of Sequences: 438
Number of extensions: 3312
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)