Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2445
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    29   0.047
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    24   1.8  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    22   7.1  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    21   9.3  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           21   9.3  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 29.1 bits (62), Expect = 0.047
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 231 SWQRISVVMNLTFFGCLVLGLPTGFF 154
           SWQR++ +  L   GC VL +P G F
Sbjct: 87  SWQRLTSLHELHVHGCKVLRIPEGAF 112


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 11/44 (25%), Positives = 21/44 (47%)
 Frame = +2

Query: 164 VGKPRTKQPKKVKFITTEIRCQEMSKGGLAYEVILAEPVGVPVP 295
           + + R+++PK +  ++            L Y +I  E + VPVP
Sbjct: 304 IERERSREPKIISSLSNNTIHNNNYNKKLYYNIINIEQIPVPVP 347


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +1

Query: 307 LTRKDSFRRRDPREAEGS*RE 369
           L   +SFR+R  REA G+ R+
Sbjct: 433 LAGDESFRKRRQREAAGNCRK 453


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 12/39 (30%), Positives = 17/39 (43%)
 Frame = +2

Query: 161 PVGKPRTKQPKKVKFITTEIRCQEMSKGGLAYEVILAEP 277
           PVGK R K P+K+     E+   +     L Y  +   P
Sbjct: 57  PVGKFRFKAPQKIPAWIGELSATKFGFPCLQYTQLPVNP 95


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 12/39 (30%), Positives = 17/39 (43%)
 Frame = +2

Query: 161 PVGKPRTKQPKKVKFITTEIRCQEMSKGGLAYEVILAEP 277
           PVGK R K P+K+     E+   +     L Y  +   P
Sbjct: 57  PVGKFRFKAPQKIPAWIGELSATKFGFPCLQYTQLPVNP 95


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,223
Number of Sequences: 438
Number of extensions: 3732
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)