Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2443
         (700 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    24   1.2  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   2.8  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   2.8  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   4.9  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   6.4  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            22   6.4  

>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = -1

Query: 673 LPSDTQEWKNEGATDHP*SFRCHACTRXVSVGSHHPE 563
           +P + +EW+NE  +D+  +F C+  +   S  + HPE
Sbjct: 339 IPLEEEEWENENESDYQDAF-CNIVS--CSPQTVHPE 372


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +3

Query: 162  KTRKSQIRRSTSRSLQG*HPGSLARSDIEIEQGG 263
            K +  QIR  ++R++Q    G L  S+++ + GG
Sbjct: 1347 KGQGEQIRTDSTRNIQILPSGELMLSNLQSQDGG 1380


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +3

Query: 162  KTRKSQIRRSTSRSLQG*HPGSLARSDIEIEQGG 263
            K +  QIR  ++R++Q    G L  S+++ + GG
Sbjct: 1343 KGQGEQIRTDSTRNIQILPSGELMLSNLQSQDGG 1376


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -3

Query: 521 AVTLAICEFHRPAF 480
           AVTLAI +FH   F
Sbjct: 778 AVTLAILDFHESGF 791


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = -2

Query: 441 PSRLKTPPGIFLRNFFKTL 385
           P  ++TP   ++R+FF+ L
Sbjct: 535 PKTVRTPTDSYIRSFFELL 553


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 7/26 (26%), Positives = 14/26 (53%)
 Frame = -3

Query: 596 PLXQRWKPSPGTYQTPVPIIAACKRA 519
           P+  +W    GT +  + ++A C +A
Sbjct: 82  PISYKWITRSGTREQFIDMVARCNKA 107


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,338
Number of Sequences: 438
Number of extensions: 4523
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)