Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2437
         (550 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p...   206   1e-54
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ...   202   2e-53
SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc...   184   6e-48
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M...   167   9e-43
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce...   114   7e-27
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch...    73   2e-14
SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom...    53   2e-08
SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces pombe...    37   0.002
SPBC18A7.01 ||SPBC4F6.19c|X-Pro dipeptidase |Schizosaccharomyces...    29   0.60 
SPAC25B8.04c |||mitochondrial splicing suppressor |Schizosacchar...    29   0.60 
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar...    25   5.6  
SPAC823.11 |||sphingosine-1-phosphate phosphatase |Schizosacchar...    25   5.6  
SPAC17G8.02 |||uridine ribohydrolase |Schizosaccharomyces pombe|...    25   7.3  
SPAC1A6.01c ||SPAC23C4.20c|human thyroid receptor interacting pr...    25   9.7  
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos...    25   9.7  

>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 647

 Score =  206 bits (504), Expect = 1e-54
 Identities = 100/146 (68%), Positives = 114/146 (78%)
 Frame = +3

Query: 81  AVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNN 260
           ++GIDLGTTYSCVG F + +VEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP+N
Sbjct: 4   SIGIDLGTTYSCVGHFSNNRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPHN 63

Query: 261 TIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDXXFXLXEXXSMALT 440
           TIFDAKRLIGRKF+D  VQ+DMKHWPF+V+S  GKP ++V YKGE   F   E  SM L 
Sbjct: 64  TIFDAKRLIGRKFDDPEVQSDMKHWPFKVISKDGKPVLQVEYKGETKTFTPEEISSMVLM 123

Query: 441 KMKEXARXLXWQXVXNAXYXPLPAYF 518
           KM+E A       V +A    +PAYF
Sbjct: 124 KMRETAEAYLGGKVTDA-VVTVPAYF 148


>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 644

 Score =  202 bits (494), Expect = 2e-53
 Identities = 98/146 (67%), Positives = 112/146 (76%)
 Frame = +3

Query: 81  AVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNN 260
           ++GIDLGTTYSCVG F + +VEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP+N
Sbjct: 4   SIGIDLGTTYSCVGHFSNNRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPHN 63

Query: 261 TIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDXXFXLXEXXSMALT 440
           TIFDAKRLIGR+F D  VQ+DMKHWPF+V+   GKP I+V +KGE   F   E  SM L 
Sbjct: 64  TIFDAKRLIGRRFNDPEVQSDMKHWPFKVIEKDGKPLIQVEFKGETKTFTPEEISSMVLL 123

Query: 441 KMKEXARXLXWQXVXNAXYXPLPAYF 518
           KM+E A       V +A    +PAYF
Sbjct: 124 KMRESAEAFLGGKVTDA-VVTVPAYF 148


>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 613

 Score =  184 bits (449), Expect = 6e-48
 Identities = 88/146 (60%), Positives = 106/146 (72%)
 Frame = +3

Query: 81  AVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNN 260
           A+GIDLGTTYSCV V++   VEII NDQG RTTPS+VAFT+TERL+GDAAKNQ AMNP N
Sbjct: 8   AIGIDLGTTYSCVAVWETANVEIIPNDQGARTTPSFVAFTETERLVGDAAKNQAAMNPRN 67

Query: 261 TIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDXXFXLXEXXSMALT 440
           T+FDAKRLIGR++ED   Q D+KHWPF+V+ + G P I+V Y GE   F   E  +M LT
Sbjct: 68  TVFDAKRLIGRRYEDPETQKDIKHWPFKVIDNNGIPTIEVNYLGEKKQFTAQEISAMVLT 127

Query: 441 KMKEXARXLXWQXVXNAXYXPLPAYF 518
           KMKE +     + V  A    +PAYF
Sbjct: 128 KMKEISEAKLNKRVEKA-VITVPAYF 152


>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 663

 Score =  167 bits (406), Expect = 9e-43
 Identities = 80/145 (55%), Positives = 104/145 (71%)
 Frame = +3

Query: 84  VGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNT 263
           +GIDLGTTYSCV V ++G+VEIIANDQGNR TPSYVAFT+ ERL+G+AAKNQ   NP NT
Sbjct: 38  IGIDLGTTYSCVAVMKNGRVEIIANDQGNRITPSYVAFTEDERLVGEAAKNQAPSNPENT 97

Query: 264 IFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDXXFXLXEXXSMALTK 443
           IFD KRLIGRKF++ T+  D+K +PF +V+D  +P ++V   G+   F   E  +M L+K
Sbjct: 98  IFDIKRLIGRKFDEKTMAKDIKSFPFHIVNDKNRPLVEVNVGGKKKKFTPEEISAMILSK 157

Query: 444 MKEXARXLXWQXVXNAXYXPLPAYF 518
           MK+ A     + V +A    +PAYF
Sbjct: 158 MKQTAEAYLGKPVTHA-VVTVPAYF 181


>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 674

 Score =  114 bits (275), Expect = 7e-27
 Identities = 64/151 (42%), Positives = 89/151 (58%), Gaps = 2/151 (1%)
 Frame = +3

Query: 72  KAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVAM 248
           K P +GIDLGTT SC+ + +    ++IAN +G RTTPS VAFT D ERL+G +AK Q  +
Sbjct: 49  KGPVIGIDLGTTTSCLAIMEGQTPKVIANAEGTRTTPSVVAFTKDGERLVGVSAKRQAVI 108

Query: 249 NPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVVS-DGGKPKIKVAYKGEDXXFXLXEXX 425
           NP NT F  KRLIGR+F++  VQ D+K  P+++V    G   ++   K     +   +  
Sbjct: 109 NPENTFFATKRLIGRRFKEPEVQRDIKEVPYKIVEHSNGDAWLEARGK----TYSPSQIG 164

Query: 426 SMALTKMKEXARXLXWQXVXNAXYXPLPAYF 518
              L+KM+E A     + V NA    +PAYF
Sbjct: 165 GFILSKMRETASTYLGKDVKNA-VVTVPAYF 194


>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
           Pss1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 73.3 bits (172), Expect = 2e-14
 Identities = 39/131 (29%), Positives = 69/131 (52%), Gaps = 1/131 (0%)
 Frame = +3

Query: 69  AKAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAM 248
           ++   VGID G + + + V ++  +++I N+  NR+TPS V++ +  R +G+AAK+  A 
Sbjct: 3   SRTNVVGIDFGNSKTVIAVARNRAIDVIVNEVSNRSTPSLVSYGERSRFLGEAAKSAEAS 62

Query: 249 NPNNTIFDAKRLIGRKFEDATVQ-ADMKHWPFEVVSDGGKPKIKVAYKGEDXXFXLXEXX 425
           N  NT+   KRL GR ++D  ++  +      ++    G    KV Y  E+  F   +  
Sbjct: 63  NFRNTVGSLKRLAGRTYDDPEIKDIESNFISAKLTEVDGFVGAKVQYLNEETAFSNIQLI 122

Query: 426 SMALTKMKEXA 458
           +   TK+K  A
Sbjct: 123 AAYFTKIKAIA 133


>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 566

 Score = 53.2 bits (122), Expect = 2e-08
 Identities = 21/77 (27%), Positives = 45/77 (58%)
 Frame = +3

Query: 84  VGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNT 263
           +GI  G   S +   + GK +++AN++GNR  PS +++   +   G  A+ Q+  N +N+
Sbjct: 27  IGISFGNQNSSIAFNRDGKTDVLANEEGNRQIPSILSYHGDQEYHGVQARGQLVRNADNS 86

Query: 264 IFDAKRLIGRKFEDATV 314
           + + + L+G+  ++ T+
Sbjct: 87  VTNFRDLLGKSHDELTL 103


>SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 848

 Score = 36.7 bits (81), Expect = 0.002
 Identities = 32/151 (21%), Positives = 62/151 (41%), Gaps = 3/151 (1%)
 Frame = +3

Query: 84  VGIDLGTTYSCVGVFQHG-KVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNN 260
           + ID GT ++   + + G  +EI+      R   S VAF   ER+ G  A N     P +
Sbjct: 25  LAIDYGTEWTKAALIKPGIPLEIVLTKDTRRKEQSAVAFKGNERIFGVDASNLATRFPAH 84

Query: 261 TIFDAKRLIGRK-FEDATVQADMKHWPFEVVSDGGKPKIKVAYK-GEDXXFXLXEXXSMA 434
           +I + K L+     E   VQ     +P   + +  +    +++   ++  + L E  +M 
Sbjct: 85  SIRNVKELLDTAGLESVLVQKYQSSYPAIQLVENEETTSGISFVISDEENYSLEEIIAMT 144

Query: 435 LTKMKEXARXLXWQXVXNAXYXPLPAYFKRL 527
           +      A  +  + + +     +P +F  L
Sbjct: 145 MEHYISLAEEMAHEKITD-LVLTVPPHFNEL 174


>SPBC18A7.01 ||SPBC4F6.19c|X-Pro dipeptidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 451

 Score = 28.7 bits (61), Expect = 0.60
 Identities = 15/56 (26%), Positives = 26/56 (46%)
 Frame = +3

Query: 189 VAFTDTERLIGDAAKNQVAMNPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSD 356
           + F+D E   GD A     + P   +  AK L+G+  +   +  D    P++V+ D
Sbjct: 125 IIFSDDEPYPGDVASRIYFLVPKFELPRAKELVGKNIDAKYITWDEDENPYQVLYD 180


>SPAC25B8.04c |||mitochondrial splicing suppressor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 378

 Score = 28.7 bits (61), Expect = 0.60
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +1

Query: 76  HPQ*ESIWVPRTLALVSSSTGRWRSSPTTRAT 171
           HP   S W+P    LVS+    W +SP+++ T
Sbjct: 283 HPLYSSSWIPTLHDLVSTRCSVWLTSPSSQRT 314


>SPAC2F7.03c |pom1||DYRK family protein kinase
           Pom1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1087

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 17/66 (25%), Positives = 31/66 (46%)
 Frame = +2

Query: 62  QNGKSTRSRNRSGYHVLLRWCLPAREGGDHRQRPGQQDHSVLCCVHRHRASHRRCRQEPG 241
           +NGK T +R +S     + W  P++E    R   G  D +    V R   +  +  +EP 
Sbjct: 477 RNGKKTPTRTKSRMQQFINWFKPSKE----RSSNGNSDSASPPPVPRLSITRSQVSREP- 531

Query: 242 GDEPQQ 259
            ++P++
Sbjct: 532 -EKPEE 536


>SPAC823.11 |||sphingosine-1-phosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -2

Query: 162 GRWR*SPPSRAGRHQRKSTWYPDRFLLRVLLPFCI 58
           G W  SP S +  H   ++++  +F +RVL   C+
Sbjct: 276 GTWFASPESLSHLHDNLNSYFLLKFFVRVLFGVCM 310


>SPAC17G8.02 |||uridine ribohydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 330

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -3

Query: 392 TLICYLDLRFASITDNLERPVLHVGLHSSIFELTSDETFGI 270
           T I  L   + S+TDN+ER  + +G  + I  +TS   F +
Sbjct: 142 TNIALLLATYPSVTDNIER-FIFMGGSTGIGNITSQAEFNV 181


>SPAC1A6.01c ||SPAC23C4.20c|human thyroid receptor interacting
           protein homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 455

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 362 ASITDNLERPVLHVGLHSS 306
           A +  NL RP+ H  LHSS
Sbjct: 408 APVIRNLPRPIYHQDLHSS 426


>SPBC119.07 |ppk19||serine/threonine protein kinase
            Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1706

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +3

Query: 87   GIDLGTTYSCVGVFQHGKVEIIANDQGNR 173
            G  LG TY+   V Q G VE+   D  N+
Sbjct: 1279 GCFLGNTYAFASVTQDGSVEVHRLDVNNQ 1307


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,985,779
Number of Sequences: 5004
Number of extensions: 37657
Number of successful extensions: 115
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)