Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2436
         (600 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   1.3  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   1.7  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   2.3  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    23   3.0  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = -2

Query: 296 ALSAATESRNSVTKIKPNTPHSTHHVARVQHH 201
           A +AAT +  +   IK  T    HH+    HH
Sbjct: 119 ATAAATATTTATGLIKQETLQRHHHLQNHHHH 150


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +3

Query: 405 TKVCGIN*VKYYSWWYGIVCSLVDATVLPMSAARQVD 515
           TK+ GIN  +  +    + C+ V  + + M   RQV+
Sbjct: 669 TKLTGINDARLRNTMENLTCATVKGSAVDMYFRRQVE 705


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = -2

Query: 242 TPHSTHHVARVQHHSH 195
           TPH  H  A   HH H
Sbjct: 429 TPHHHHSHAATPHHQH 444



 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = -2

Query: 236 HSTHHVARVQHHSHVA 189
           HS  H     HHSH A
Sbjct: 423 HSHIHATPHHHHSHAA 438


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 8/30 (26%), Positives = 13/30 (43%)
 Frame = +1

Query: 109 KERWTDFS*WLCSATLRHALIHKHYTSATC 198
           K++  D   W+C     +  +H  YT   C
Sbjct: 459 KKQQGDTCCWVCDQCEEYEYVHDEYTCMDC 488


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,654
Number of Sequences: 438
Number of extensions: 3165
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)