Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2431
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    26   0.43 
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    23   2.3  
M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee homeobox-...    23   4.0  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    22   7.1  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    21   9.3  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    21   9.3  

>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 25.8 bits (54), Expect = 0.43
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = -2

Query: 446 LGRCQYHKNFHQIHRHSPFRRYRKDRVQCK*SRRKRGSHLDRVVLQ 309
           L   + HK+ +   +HS   + RK+  Q +   R++  H DRV  Q
Sbjct: 45  LNSLRNHKSIYH-RQHSKNEQQRKEMEQMREREREQREHSDRVTSQ 89


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -3

Query: 571 EGDSDHLRDISGG*VAGDHCAVLGAEAV 488
           + D D + D++G     DH A +GA+A+
Sbjct: 42  DSDGDGIGDLNGITARMDHIADIGADAL 69


>M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H40. ).
          Length = 74

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -3

Query: 376 KTAFNASRVAASEEAILTEWFFSVQERLYFTL 281
           +TAF   ++ A E    T  + SV ERL   L
Sbjct: 12  RTAFTYEQLVALENKFKTTRYLSVCERLNLAL 43


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -3

Query: 280 LVLELTIFHSIFPIAGLFLNI 218
           +V+ LTI + I  + G+F NI
Sbjct: 39  MVIPLTIIYMIIFVTGIFGNI 59


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = -2

Query: 374 DRVQCK*SRRKRGSHLDRVVLQCTREALFYAP 279
           DRV  +   + R   +DR  L C R  + + P
Sbjct: 313 DRVLSELVSKMREMKMDRTELGCLRSIILFNP 344


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = -2

Query: 374 DRVQCK*SRRKRGSHLDRVVLQCTREALFYAP 279
           DRV  +   + R   +DR  L C R  + + P
Sbjct: 313 DRVLSELVSKMREMKMDRTELGCLRSIILFNP 344


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,610
Number of Sequences: 438
Number of extensions: 4649
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)