Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2394
         (700 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    25   0.52 
DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               24   1.2  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    22   6.4  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    22   6.4  
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    21   8.5  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    21   8.5  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    21   8.5  

>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 25.4 bits (53), Expect = 0.52
 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 7/67 (10%)
 Frame = +1

Query: 265 QLQINSNLKF-KFIINFLIWYLVFGFCTSNFLKINLY------LLV*TLHINKLKLVLKF 423
           Q  +N  L+  KF  +     L+F   T N L + LY      +L   LH+ + KLV K+
Sbjct: 137 QATLNCGLRLEKFPFDVQECPLIFESWTHNVLDMVLYWDQEPIILADELHLTEYKLVEKW 196

Query: 424 TKNTEYF 444
             ++E F
Sbjct: 197 VNSSEIF 203


>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 9/31 (29%), Positives = 15/31 (48%)
 Frame = -3

Query: 185 LTHIVFHVTMKYLSNLNKETAIPKWRGDRET 93
           + ++ FH+T   +SN N  T   +   D  T
Sbjct: 122 IDYVKFHITQYMISNANSNTTSEEESSDNST 152


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +1

Query: 268 LQINSNLKFKFIINFLIWYLVFGFCTSNFLKINLY 372
           L+  SNL   F+IN  I   +  FC S  + IN Y
Sbjct: 83  LRTPSNL---FVINLAISNFLMMFCMSPPMVINCY 114


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +1

Query: 112 HFGIAVSLFKFDRYFIVT*NTM*VSDSDWF 201
           HF   +    FDR+F +   T  V D D++
Sbjct: 2   HFNNVIKYINFDRFFFIEGMTN-VLDFDYY 30


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -1

Query: 97  KRRECNSISKLKLRLNYI 44
           K+  CN+  KL   +NYI
Sbjct: 97  KKLYCNNYKKLYYNINYI 114


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -1

Query: 97  KRRECNSISKLKLRLNYI 44
           K+  CN+  KL   +NYI
Sbjct: 97  KKLYCNNYKKLYYNINYI 114


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +1

Query: 268 LQINSNLKFKFIINFLIWYLVFGFCTSNFLKINLY 372
           L+  SNL   F+IN  I   +  FC S  + IN Y
Sbjct: 49  LRTPSNL---FVINLAISDFLMMFCMSPPMVINCY 80


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,824
Number of Sequences: 438
Number of extensions: 3873
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)